Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2520 ATGAGCCGCGGCAGAAGGAGAAAGCTGCATTTTAGCAAGATCTACTCGTTTGCATGTGGGAAAGCTTCTTTAAAGGATGATCATTCACAACTTGGGGGTCCGGGGTTTTCTCGAGTTGTTTTCTGTAACGAACCAGAGTGTTTTGAGGCAGAAATTCGTAACTACATAGACAATCATATTAGTACAACCAAGTATACTCTAGCTACTTTCCTCCCTAAGTCTTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTCTATTTTTTAGTCAGTGGGATCCTTGCTTTTACTCCTCTTGCTCCTTACACGGCTGTTAGCGCGATTATCCCTCTTATTCTTGTCATTTCAGCGACAATGATCAAAGAAGGGATTGAGGATTGGAGGCGGAAGAAACAGGATATTGAGGTTAACAATAGAAAGGTTAAAGTGCATCAAGGTGATGGAGTTTTTGCTTATACAGAGTGGAAGAATCTGAGAGTGGGTAATATTGTGAGAGTGGAGAAGGATGAATTCTTTCCAGCAGATATTATCTTGCTTTCATCCAGTTATGAGGATGCAATCTGCTATGTTGAGACAATGAACCTTGATGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTGACTTCGCATATGCATGAGGATTCTATGTTCAACAGCTTTAAGGCTATCATAAAATGCGAGGATCCAAATGCAAATTTGTACAGTTTTGTTGGTAGTATGGAGTTGGAAGAGCAACAATATCCTCTATCTCCTCAACAACTACTCCTTCGAGACTCTAAACTCCGGAATACAGATTATATATATGGGGTGGTTGTCTTTACTGGTCGTGACACAAAGGTTATTCAAAATTCTACGGATCCACCTTCAAAGAGAAGCAAAGTTGAGAGGAAAATGGATAAGATTATATATATTTTGTTCTGTCTTCTATTTTTGCTTGCTCTTGTAGGATCTATATTTTTTGGCCTTGTGACTGACGAGGATTTGGAAAATGGAAGAATGAAGAGATGGTATCTCAGGCCTGATGATGCCAAAATTTTCTTTGATCCAAAAAGGGCTCCAATAGCTGCAATATTTCATTTTCTTACGGCACTGATGTTATATAATTACTTCATTCCAATCTCACTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAGAGCATATTTATCAATCAAGATATTAATATGTATTATGAAGAAGCTGATAAACCTGCTCGTGCTCGCACCTCAAATTTGAATGAAGAACTTGGTCAAGTTGATACAATACTCTCTGACAAGACTGGAACTCTGACCTGTAATTCAATGGAGTTCATTAAGTGTTCTGTGGCAGGGAGGGCTTATGGACGGGGTTTCACAGAGGTAGAAAGGACTATAGGTAGACAAAAGGATTCACCCCTGCATGAAGCTGTAAATGGGGGGAATCACCATGAGGATGCCAATGATAAAACTTCACATATCAAGGGCTTTAATTTTAAGGATGATAGGATTATGAATGGGAACTGGGTTAACGAGCCTCATGCAAATGTAATTCAAATGTTTTTCCGTCTTCTTGCAACTTGTCATACGGCAATACCTGAAATCAATGAGGACACTGGAGAGGTTTCTTACGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCTAGAGAACTCGGCTTTGAATTCTACAAAAGAACACAGACAAGCATATCACTGCACGAGTTTGATCCTTCCTTAGGCAAGAAAGTTGATAGGACATATAAACTGCTGCATGTTCTGGAGTTTAATAGCTCAAGAAAGCGGATGTCTGTCATAGTAAGAGATGAAGAGGATAAAATATTATTATTCTGTAAAGGTGCAGACAGTATCATGTTTGAAAGACTTGGAAAGAATGGAAGGGAGTTTGAAGAGGAGACCAAAGAACATGTCAATGAGTATGCTGATGCAGGATTGCGGACTTTGATACTTGCCTATCGTGAGCTTGAAGAGGAAGAATACAGAGAATTTGATGACAAGTTCACTAAGGCCAAAAGTTCAGTTAGTGCAGATCGAGAATCACTGATTGAGAAAGTAACTGACAACATTGAGAGGAATTTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATTGACAGGCTTGCTCAGGCGGGAATTAAGATTTGGGTTTTGACCGGGGACAAAATGGAGACTGCCATTAATATTGGTTTTGCCTGTAGCTTACTAAGACAAGATATGAAGCAGATTGTTATTACCCTGGAGACATCAGAAATTAAGGCGCTAGAAAAGACAGGGGATAAGGCTTCTATCACCAAGGCATCAATGCAATGCGTCCTCGATCAAATTACTCGAGGGAGAGCTCAGATCACTTCACCAAATGGGTTATCTGAAGCATTTGCATTAATTATTGATGGAAAATCACTTTCTTATGCTTTAGAGGACAGTATGAAGGCATTGTTTCTTGAGGTAGCAACACATTGTGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCACTGGTAACAAGGTTAGTTAAAACTGGAACACGGAAAACAACTTTAGCTATTGGCGATGGTGCCAATGATGTAGGGATGCTTCAAGAAGCGGACATTGGAGTCGGAATTAGTGGTGCGGAAGGAATGCAGGCCGTTATGTCAAGTGATGTTGCAATTGCACAGTTTAAATATTTAGAGCGCCTGCTTCTTGTGCATGGTCATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTTTTCTATAAGAATATTACTTTTGGTTTTACCATATTCCTATACGAAGCATTCACATCATTCTCTGGGCAACCTGTATATAATGATTGGTTTTTATCGCTTTACAATGTTTTCTTCTCGTCGCTTCCAGTGGTAGCTTTGGGAGTTTTTGATCAGGATGTATCTGCAAGACTCTGTCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCTTTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTGCAGTGCCGTGATCATTTTCTTCCTTTGCACTAGAGCACTCGAGCATCAGGCATTCAACTCCGATGGGAAAACTGCAGGGCGGGATATTTTGGGTGCAACAATGTACTCTTGTGTTGTTTGGGTTGTGAACTTGCAAATGGCGCTCGCTGTTAGTTACTTCACCTTGATACAGCATCTTTTCATCTGGGGTTCGATTTCGATCTGGTACATTTTTCTCCTGATCTATGGGTCCATGACCCCAACCTTTTCAACCAATGCTTACCAGATTTTCATCGAAGTCCTTGCACCTGGTCCTTCCTACTGGTTTGTGCTTCTGTTTGTGGTGATCACAACACTCATTCCTTACTTCTCCTACTCAGCTATACAGATGAGGTTCCTTCCCATGTATCATCAAATGATTTTATGGATTAGGAATGAAGGGCAACTAGACAACCAAGAGTACTGTGATATTTTCCGGAACACTTCCACTTTCCGATCAACGAGCGTGGGTTCCACAGCACGAAAGAAAGGGAATGAACTCGATCTACGCAAATGTAAGGCCGAGAAAATCCGCGGCGGATTTGGCCATCACGGTGGTGAATTCGTTGAAGCTAATTACACCGTCGCCGTCGGTATCGGCCTGTCGCATCATCTCGGAGAGTTCGCGGTAGGTCAGAGGATGGCCCATCTTCGCCATGGAACCAGCGAGCTCCGCAGCGGTGATGTAGCCATTGCCATCGCGATCGAAAGATCTGAAAACCTCCAACAACTGCTCTTGATTGACGAGAATATCGTCGTTCATGTCGGGGAGAATGGCATTGACGAGTTCATCGAATTCTATAGAGCCGTTGCCGTTGGAATCCATGTTGGAGAGGAGAGAATGGAGTTGGTCGCCGGAGGGTTTGATGCCGAGGGAGCGGAGAAGGGCGCCGAGCTCGAGCTGCGTGAGGCTGCCGTCGGAGTTCATGTCGAAACGCCTGAAAATGTCGTGCAGCTGCTTGAGCTGCGGGTCGGATTGAATGGAAGCCATGGATTTGGTTCTTCAGACGATTCGACAAGATCCGCAAGGAGGAGTTCGTCGAAGTTGGGGGATTTGGAAAATGGGGAGATTGGTGAGGGGGAAGGGTTGGCCTATCCGAGACTCCCTGCGTGCATCCTTGAACTTAAGCCCGCCTGTGGACTTGGCCTTGGACAATTCCCACCACTTTAG 4227 42.87 MSRGRRRKLHFSKIYSFACGKASLKDDHSQLGGPGFSRVVFCNEPECFEAEIRNYIDNHISTTKYTLATFLPKSLFEQFRRVANFYFLVSGILAFTPLAPYTAVSAIIPLILVISATMIKEGIEDWRRKKQDIEVNNRKVKVHQGDGVFAYTEWKNLRVGNIVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSHMHEDSMFNSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVIQNSTDPPSKRSKVERKMDKIIYILFCLLFLLALVGSIFFGLVTDEDLENGRMKRWYLRPDDAKIFFDPKRAPIAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGRAYGRGFTEVERTIGRQKDSPLHEAVNGGNHHEDANDKTSHIKGFNFKDDRIMNGNWVNEPHANVIQMFFRLLATCHTAIPEINEDTGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFDPSLGKKVDRTYKLLHVLEFNSSRKRMSVIVRDEEDKILLFCKGADSIMFERLGKNGREFEEETKEHVNEYADAGLRTLILAYRELEEEEYREFDDKFTKAKSSVSADRESLIEKVTDNIERNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLRQDMKQIVITLETSEIKALEKTGDKASITKASMQCVLDQITRGRAQITSPNGLSEAFALIIDGKSLSYALEDSMKALFLEVATHCASVICCRSSPKQKALVTRLVKTGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGQPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVLFSWLRILSWMFNGLCSAVIIFFLCTRALEHQAFNSDGKTAGRDILGATMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYGSMTPTFSTNAYQIFIEVLAPGPSYWFVLLFVVITTLIPYFSYSAIQMRFLPMYHQMILWIRNEGQLDNQEYCDIFRNTSTFRSTSVGSTARKKGNELDLRKCKAEKIRGGFGHHGGEFVEANYTVAVGIGLSHHLGEFAVGQRMAHLRHGTSELRSGDVAIAIAIERSENLQQLLLIDENIVVHVGENGIDEFIEFYRAVAVGIHVGEERMELVAGGFDAEGAEKGAELELREAAVGVHVETPENVVQLLELRVGLNGSHGFGSSDDSTRSARRSSSKLGDLENGEIGEGEGLAYPRLPACILELKPACGLGLGQFPPL 1408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33046188 33057020 + CaPI482276_05g025200.1 Cam05g2520 127924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2520 1408 Pfam Cation transport ATPase (P-type) 520 624 - -
Cam05g2520 1408 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Cam05g2520 1408 SUPERFAMILY HAD-like 419 917 IPR036412 -
Cam05g2520 1408 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1140 IPR023298 -
Cam05g2520 1408 MobiDBLite consensus disorder prediction 465 484 - -
Cam05g2520 1408 Gene3D - 115 286 - -
Cam05g2520 1408 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cam05g2520 1408 FunFam Phospholipid-transporting ATPase 116 286 - -
Cam05g2520 1408 FunFam Phospholipid-transporting ATPase 540 698 - -
Cam05g2520 1408 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 699 IPR023299 GO:0000166(InterPro)
Cam05g2520 1408 SUPERFAMILY Calcium ATPase, transduction domain A 139 283 IPR008250 -
Cam05g2520 1408 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1144 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cam05g2520 1408 SFLD C1.7: P-type atpase like 408 913 - -
Cam05g2520 1408 NCBIfam phospholipid-translocating P-type ATPase 55 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cam05g2520 1408 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Cam05g2520 1408 FunFam Phospholipid-transporting ATPase 698 902 - -
Cam05g2520 1408 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cam05g2520 1408 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Cam05g2520 1408 MobiDBLite consensus disorder prediction 1350 1374 - -
Cam05g2520 1408 Gene3D - 698 902 IPR023214 -
Cam05g2520 1408 SFLD p-type atpase 408 913 IPR044492 -
Cam05g2520 1408 Gene3D - 544 697 IPR023299 GO:0000166(InterPro)
Cam05g2520 1408 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Cam05g2520 1408 NCBIfam HAD-IC family P-type ATPase 830 944 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2520 Cam-Chr5:33046188 Cam05g2681 Cam-Chr5:34213421 2.40E-274 dispersed
Cam06g0935 Cam-Chr6:14042056 Cam05g2520 Cam-Chr5:33046188 0.00E+00 transposed
Cam09g0073 Cam-Chr9:1579712 Cam05g2520 Cam-Chr5:33046188 0.00E+00 transposed
Cam09g1254 Cam-Chr9:14573992 Cam05g2520 Cam-Chr5:33046188 3.50E-21 transposed
Cam04g1173 Cam-Chr4:25789838 Cam05g2520 Cam-Chr5:33046188 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2520 K01530 - csv:101207148 2217.19