Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2521 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCGCCTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGGGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGCCTCGGATGGTTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCGGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATTCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCTCCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGTCATCACCGCCCCCATCTCCTCCACCACCGCCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTGTAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGGATGGTGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAAATTAGCTCTCGACGAACAAACTCATATAACAACCCGTGTTGTAGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2160 51.02 MAAVSPAPNSSPSPASPSPPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSGTPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPPRMVPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNSPPNSSPPPAAQPPQSPPQSSKPPENPPPLPPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIVVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33057827 33061542 - CaPI482276_05g025210.1 Cam05g2521 127925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2521 719 MobiDBLite consensus disorder prediction 10 257 - -
Cam05g2521 719 Pfam Protein kinase domain 391 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2521 719 FunFam proline-rich receptor-like protein kinase PERK8 466 679 - -
Cam05g2521 719 ProSiteProfiles Protein kinase domain profile. 390 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2521 719 SUPERFAMILY Protein kinase-like (PK-like) 373 663 IPR011009 -
Cam05g2521 719 MobiDBLite consensus disorder prediction 1 282 - -
Cam05g2521 719 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524(InterPro)
Cam05g2521 719 CDD STKc_IRAK 396 668 - -
Cam05g2521 719 SMART serkin_6 390 669 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2521 719 Gene3D Phosphorylase Kinase; domain 1 367 465 - -
Cam05g2521 719 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 253 697 IPR047117 -
Cam05g2521 719 PRINTS Proline rich extensin signature 1 22 - -
Cam05g2521 719 PRINTS Proline rich extensin signature 61 86 - -
Cam05g2521 719 PRINTS Proline rich extensin signature 42 59 - -
Cam05g2521 719 PRINTS Proline rich extensin signature 24 40 - -
Cam05g2521 719 Gene3D Transferase(Phosphotransferase) domain 1 466 682 - -
Cam05g2521 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2521 719 FunFam Proline-rich receptor-like protein kinase PERK8 363 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0795 Cam-Chr1:8878420 Cam05g2521 Cam-Chr5:33057827 1.80E-61 dispersed
Cam05g2084 Cam-Chr5:29432977 Cam05g2521 Cam-Chr5:33057827 3.20E-38 dispersed
Cam05g2521 Cam-Chr5:33057827 Cam11g0552 Cam-Chr11:6992725 4.70E-149 dispersed
Cam07g1650 Cam-Chr7:31067558 Cam05g2521 Cam-Chr5:33057827 2.50E-59 dispersed
Cam11g0466 Cam-Chr11:6133566 Cam05g2521 Cam-Chr5:33057827 1.00E-39 dispersed
Cam11g1739 Cam-Chr11:29983053 Cam05g2521 Cam-Chr5:33057827 2.10E-64 dispersed
Cam05g2521 Cam-Chr5:33057827 Cam05g2526 Cam-Chr5:33114733 7.10E-69 proximal
Cam01g0116 Cam-Chr1:1433136 Cam05g2521 Cam-Chr5:33057827 3.00E-43 transposed
Cam01g2391 Cam-Chr1:35861841 Cam05g2521 Cam-Chr5:33057827 6.00E-46 transposed
Cam02g2325 Cam-Chr2:35808221 Cam05g2521 Cam-Chr5:33057827 3.10E-30 transposed
Cam05g1172 Cam-Chr5:10969562 Cam05g2521 Cam-Chr5:33057827 1.70E-63 transposed
Cam07g1232 Cam-Chr7:26699487 Cam05g2521 Cam-Chr5:33057827 9.70E-56 transposed
Cam01g0603 Cam-Chr1:6519930 Cam05g2521 Cam-Chr5:33057827 5.00E-42 wgd
Cam03g0674 Cam-Chr3:7689807 Cam05g2521 Cam-Chr5:33057827 2.30E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85217 PF00069 Pkinase 3.10E-43 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2521 - - - 0.0