Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2526 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTTTTATGGAATTCTTCTGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGAGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACGACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTATGACAGGATTGAGCTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1881 42.96 MVQMGIIRIKVSIFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33114733 33117814 + CaPI482276_05g025260.1 Cam05g2526 127930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2526 626 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2526 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Cam05g2526 626 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2526 626 Gene3D Ribonuclease Inhibitor 35 216 IPR032675 -
Cam05g2526 626 SMART serkin_6 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2526 626 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Cam05g2526 626 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Cam05g2526 626 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Cam05g2526 626 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Cam05g2526 626 SUPERFAMILY L domain-like 38 199 - -
Cam05g2526 626 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Cam05g2526 626 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Cam05g2526 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2526 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 35 216 - -
Cam05g2526 626 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Cam05g2526 626 Pfam Leucine Rich Repeat 126 148 IPR001611 GO:0005515(InterPro)
Cam05g2526 626 Pfam Leucine Rich Repeat 102 123 IPR001611 GO:0005515(InterPro)
Cam05g2526 626 Pfam Leucine Rich Repeat 175 194 IPR001611 GO:0005515(InterPro)
Cam05g2526 626 SUPERFAMILY Protein kinase-like (PK-like) 284 576 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0752 Cam-Chr1:8320005 Cam05g2526 Cam-Chr5:33114733 1.00E-232 dispersed
Cam05g2526 Cam-Chr5:33114733 Cam11g0535 Cam-Chr11:6812927 4.70E-230 dispersed
Cam05g2521 Cam-Chr5:33057827 Cam05g2526 Cam-Chr5:33114733 7.10E-69 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85218 PF00069 Pkinase 1.10E-44 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2526 - - - 0.0