Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2534 ATGTGGAGAACCATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAAACCAAAACCAATACCAAACAAACGGCCGTCTTCATTGCCTCCTGCCTTGAACCCCACCCCCAAATCTCCGCCCAAGGAACTTTACTTCAACCGCGATGGCTCTACCTTTAAAAAACTTCAGGTCGGGGTTAATCTGGTGGCGGATCTGGTGGGTGTTACATTAGGGCCGAAGGGAAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATAGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAACTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCCGAGGGTATGAAGGTTATTTCGTCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTAGGAAATTTGATTTCAGATGCCTTACGTCAAGTTGGAAGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGACCGTGGATATTTATCTCCATACTTCGTTACTGATAGAAAGAAGATGGTAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCTGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTTAGAGAAGATAGTGGATTCACTTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAACATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCGGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGACGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAAAGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAATGTTGTAATAGATAAGGTTCTAATCAACAATGATATGGGTTATGGATATAATGCGGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCTTGGACCCTTCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGACAAATGGGTCTCTAGCTCCACGGACAAGATCAGAGTATGTGGAGAGTATTCTCAAGTTGAAGGGATTCAATGGGAGTACTGTTTTAAGACAGCTGCACGGTACTTTAGTCACCAGACAAATGGGTCTTGTCTCTGGAGCCACCATTCAATGGGCATGTAG 1935 43.41 MWRTMASSPTPISPLSFPNPIPRSRSKPKPIPNKRPSSLPPALNPTPKSPPKELYFNRDGSTFKKLQVGVNLVADLVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGFTLEKTGKEVLGSASKVVISKHSTLIVTDGNTREAVRKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKKVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGNVVIDKVLINNDMGYGYNAATDRYEDLMKAGILDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPIPRRTPMPISDKWVSSSTDKIRVCGEYSQVEGIQWEYCFKTAARYFSHQTNGSCLWSHHSMGM 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33161716 33168037 + CaPI482276_05g025340.1 Cam05g2534 127938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2534 644 MobiDBLite consensus disorder prediction 1 53 - -
Cam05g2534 644 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 50 579 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 Coils Coil 388 408 - -
Cam05g2534 644 MobiDBLite consensus disorder prediction 13 48 - -
Cam05g2534 644 SUPERFAMILY GroEL-intermediate domain like 191 254 IPR027410 -
Cam05g2534 644 SUPERFAMILY GroEL apical domain-like 234 425 IPR027409 -
Cam05g2534 644 Gene3D - 64 574 IPR027413 -
Cam05g2534 644 Pfam TCP-1/cpn60 chaperonin family 73 576 IPR002423 GO:0005524(InterPro)
Cam05g2534 644 SUPERFAMILY GroEL equatorial domain-like 60 573 IPR027413 -
Cam05g2534 644 FunFam 60 kDa chaperonin 241 422 - -
Cam05g2534 644 PRINTS 60kDa chaperonin signature 317 340 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 PRINTS 60kDa chaperonin signature 399 424 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 PRINTS 60kDa chaperonin signature 447 468 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 PRINTS 60kDa chaperonin signature 77 103 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 PRINTS 60kDa chaperonin signature 133 160 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 Gene3D - 187 459 IPR027410 -
Cam05g2534 644 ProSitePatterns Chaperonins cpn60 signature. 454 465 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Cam05g2534 644 Gene3D GroEL 241 422 IPR027409 -
Cam05g2534 644 NCBIfam chaperonin GroEL 52 578 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cam05g2534 644 CDD GroEL 52 575 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2534 K04077 - - csv:101209342 1045.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1482 Cam-Chr3:29727537 Cam05g2534 Cam-Chr5:33161716 1.50E-218 dispersed
Cam05g2534 Cam-Chr5:33161716 Cam06g0764 Cam-Chr6:10233953 7.50E-122 dispersed
Cam05g2534 Cam-Chr5:33161716 Cam09g0062 Cam-Chr9:1513079 7.50E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67