Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2535 ATGAAAGCTGACAGTCTAACCACACATAAGCTTGCTGTTCTGCACCCAGTGAGACCTTTCATTAGAGGTTCTTTCCCGCGCTTAAAGCTCTTCTCTTCTTTCGCTTTCATTCCCAAAGGTTCCCCTCGACCAGGTTCCGTCCGCTTGCCTCAGAATTCCTGCTTCAAGGGTGTGCGTTATGACTGTCCAGTAATGGGTGCAACGGAATTATCTGATCTCGAGGATGTGGATTTGTTGGTGGAGATGTGCATTACGCATACACTGCCACCGGCTCTGACGCTTAAGCAGGGGCTGGAGAGTATTAGTGAGGCCATTGAAAAGTTGAAATTAGAATCTCCACGTTCTTCTCACGGAGTTTTCAGGTTTCAGGTGGCTGTTCCCCCGAGTACAAGAGCTCTTTTGTGGTTCTGTTGTCAACCAGAGTCATCTGAAGTGTATCCTATCTTTTTCCTTTCCAATGAGAAGGATGCCACAATTAAGTCACTGTACTTGAATGATACCCGTGGTGTTTTTGGAATTGGTACTGCAATTTACTTTGCAAGCTTGGCTTCCACTTCATCGAAACGAAGTACATTGAAAAGGTTTCTCATGAATGATTCAGCTCCTATTATGGCTTATGGTTTTGTTAATGCTAATACCGGGGAGACATCTTCGCTGAAGAGTGAGGCTGGTCATTCTTTCTTTTGTGTTCCCCAAATTGAGTTGAGTGAGTACGAGGGCATTTCTGTTCTCTCTGCAACACTTGCATGGGGTGAATCTTTCCCTTGTACATTTGAGGAAGCTCTCCATTCTTTGGGCTCATCTATCTACCAGATCAGCACTAATTTTCCATCTATTGAAAACTGCCGGTACAAATATATAAGATCTTCATTAACAGCTTCAAAATTTGTGGATGGAACAAATCAGATGGCATACATGAAAGTGCTTTCTGTAGCTGGTGAAAGTTTCAGGAATGGCATCATGGAAATGGAGTCTGCACTCTCCCATCAATTCTGCATTAGGGTTTCACCAAGTGTTGCCGTTGCATGCAATATGTTGGATCATATCAACAAAACTGGTAACTCAGAGCAAGAGCATGCCAACATTAATGCTCTCTGGGCATCGCTCATAGTTGAAGAATGTTCTCGTCTTGGTTTGACGTATTTTTGCATAGCTCCTGGATCAAGATCATCCCCTCTTGCCATAGCTGCTGCAAGTCATCCCCTTATGACATGTATTGCCTGCTTTGATGAACGCTCTCTTGCTTTTCATGCTATTGGGTATGCCAAAGGATCTCATAGTCCAGCAGTTGTAATCACATCGTCAGGCACTGCTGTTTCAAATCTTCTTCCTGCTGTTGTTGAAGCTAGTCAAGATTTTCTTCCTCTTTTATTGCTTACAGCTGACCGTCCCCCGGAGCTACAGGACGCAGGAGCAAATCAAGCAATTAATCAGGTAAACCATTTTGGTTCATTTGTGAGGTTCTTCTTCAATCTTCCTGCTCCAACTGATCAAATTCCCGCCAGAATGGTACTTACCACTCTCGATTCTGCTGTACATTGGGCAACCTCTTCACCCTGTGGCCCCGTTCACATAAACTGTCCATTTAGAGAGCCACTGGAAAATAGTCCAAGTCCATGGAATTTGAGTTGCTTAAATGGTTTACACATTTGGTTATCAAGCACTGAAGTTTTTACCAAATATATTCGACTTGAAGCGTCTCCAATGTCTATTGATTCTTTTGGTCAAATGGCTGAGGTTTTGAAAGTAATCCGTGGAGCCAGGAAGGGAATTCTACTTCTTGGATCAATTCAATCAGAGGATGAGATATGGGCTGCTTTTCTATTGGCCAAACATATTTCATGGCCTATAGTGGCCGATGTATTGTCTGGTTTACGATTAAGAAAGAGTTTGTCTGCATTCCTAGAAATGGAAAATAACTTTTTCTTTGTCGATCACCTTGATCACACTTTGCTTTCTGAATCGGTGAGAAAATGGCTAAATTTTGACGTGATTATTCAGATTGGAAGCAGGGTAACAAGCAAACGTGTTTCAAAGATGCTTGAGGACTGCAGTCCCTGTTCATACATCATGGTTGATAAGCATCCAGGTCGTCATGATCCATCACATATTGTAACCCATAGAATTCAAAGCACCGTCTTAGAATTTGTTGGTTGTTTACTTAAAGCTGATTTTCCTCTCAATAGGAACAAGTGGACTGCTACTTTACGAGCATTGAATTTGATGGTTGAATGGGAAATACAATTTCAAATTTCTGCTAACTACTCTCTATCTGAGCCACAAGTTGCTCAGGTAATCTCAGAAGCACTTCCATTTGATTCTGTTTTGTTCCTGGGGAACAGCATGCCAATTCGTGATGTAGATATGTATGCATATGGCTGGTCAAAATGCAACGACAGTGTAGCGGCTAGACCATTAAACTTACGACTGCCATTTTGCTGGATATGGACTTCTGGAAATAGGGGAGCCAGTGGTATTGACGGACTTCTTAGCACAGCAGTTGGTTTTTCTGTTGGATGCAACAAACGAGTGCTTTGTGTCGTTGGAGATGTTTCTTTCCTTCATGATACAAATGGCTTAGCAATTTTGAACCAGAGGATGACGAGGAAACCTGTGACTGTAGTTGTAATCAATAATAATGGTGGGGCAATCTTCAGTCTCCTTCCTATCAAGGACAAAGTAGAGGCAGCAATACTAGACCAATTCTTCCACACCTCTCACAAGGTTTCACTCCGAAGCCTATGCGTGGCACATGGCTTGAAGCATTTACATGTACGGACAAAGATGGAACTTCAAGATGCTTTATTTATGTCTCATCATGAAGAAAATGATTGCATAATCGAGGTCGAAAGTTCCATTGATGCCAATACTGCCTTCCACAGTGTCTTGAGGAAGTTCACTTGTCAAGCAGTAGAGCATGGCTTTTCAAGGCTTTATTCTGAAGAATCTGTTTCACCTGGACTCTTCCTCTGCAAGATAAGTAGAATGGAATGCACATTGTTCAGAATCCCACTATGTGCTCCACCTACAACGTCATCTGGTTCTATTGATCAAGTCAGTCGGAAGTTCTTCAGAGAAGGTTTTATTTTGTCTTTGTTTCTGGAGGACGGGAGTCTTGGCCTTGGTGAGGTTTCACCCCTTGACATCCACAGAGAGAACCTACTAGATGTGGAAGAGCAACTTAAGTGTCTCATTCATATATTAAAGGGAGCCGAGATCAACAGCTCCATTCCTCTACTAAGGGGCTCATTTTCATCTTGGATTTGCCATGAACTGGGAATACCACCAAGTTCAATCTATCCAAGTGTTAGATGTGGTTTGGAAATGGCTGTTCTCAATGCCATAGCAGGGATAAAAGGTTGCAGCTTGTTAGATGTACTCCAGCATCGGTTAGATGAAGAAAAGAACTTGACAACTTCATCAAAAGTTCAAATTTGTGGGCTGTTGGATTCTGGTGGAACTCCATCTGAGGTTGCTCGTGTTGCTAAGACACTGGTCGAAGAAGGATTTCCTGCTATCAAGTTAAAGGTAGCCCGACAACGGAATGTCATGTATGATGCTGCAGTTGTACAGGAAGTAAGGAAAAAGCTTGGCAACCAAATTGAACTCCGCGTTGATGCCAATCGGAATTGGAGCTATGAAGAAGCTATTTTATTTAGCTCTTTGGTGAAGGACTGTGGCCTGCAATATATTGAGGAACCAGTCATGGATGAAGATGCTATTATTAAATTCTGTGAAGAGAGTGGTTTGCCTGTTGCACTGGATGAAACTGTCGATCATATTCAAGACAATCCCGTGAAAGAACTAGCGAAGTATGCTCATCCAGGAATTGTTGCTATAGTTATAAAACCAAGTGTCATTGGCGGATTTGAAAATGCAGCATTAGTAGCGAGGTGGGCACAACAACATGGAAAAATGGCTGTTGTTAGTGCTGCATTTGAAAGTGGTGTAGGTTTGTCTGGATATATACACTTATCCTGTTATCTGGACCTTCAGAATGCAGAAGTTAGAAAACTGATGAATATTCAACCAGCCCCATCTATAGCTCACGGTCTAGGAACTTACCGTTGGCTTGAAGAAGATGTAACTGTCAATCCTCTCAGAATTCGCCGTGACCCTTATAGCGGCATTATTGAAGCATCTGTTGCTGAGGCTAATCGACTTCTAAATAGTTTTGAAATCAACCAGAAGTTTGTTTGTAGAAAATTTACTGAAGAGCAAGTTCGTATGTTCAAATTTAGTGTAGACTTAAAGGGGTTCTCTTATTCAATAAAAGTTCTAGAGGTTGGACAAAGAACAAACGATAATGTGCTCTTCTTTCTTCATGGATTTCTTGGAACTGGTGAAGACTGGATTACAATCATGAAAGGCGTCTCAGGTTCAGCGAGATGCATTTCTCTTGACCTTCCTGGTCACGGGGAATCAACGACCCAAAAGAATGATTGTGATGTTCATGGTTTGGAGGAACCAAGTTTTTCAATGGAGGTTGTTGCTGGTCTACTGTATAAGTTGATTCATCATCTTGCTCCTGGTAAAGTTATAGTTAACCTTGTAGGGTATTCAATGGGGGCTAGGATTGCAATGTACATGGCCCTGAGATTTGGTGATAAGATTGGAAGAGCTGTTATAATATCTGGAAGCCCCGGATTAAAAGACAAGATGGCAAGAAGAATCCGCAGAGTTAAAGATGATTCTAGAGCACGAATCCTTAAGGTCTATGGCTTACAAAGCTTTCTTGAGGCGTGGTATTGTGGGGAACTATGGAAAAGTTTAAGAGAACATCCACATTATAGTCAAATTATTGCCAGCCGATTGAAGCACGATGATGTGCAGCATCTTGCAAAAGCTCTATCTGATTTAAGCATTGGAAGGCAGCCGCAATTGTGGGATGAATTAAAATACTGCAAAACACCACTTTCATTCATTGTTGGGGAGAAGGATACAAAATTCAAGACAATTGCACAGAAAATTCTATCTCAAATTGATATGGACAAGAAGATCAAAGACGAACCAATTGTTGACCTCCATGAAATAGTTGAGATCCCGGACTCAGGACATGCTGTCCATCTGGAGAATCCTCTTGCTGTTATCAATGCATTAAGTAGATTTCTAATAAGGAGTAGAACACACTGCTCTTACAATTCGGATTTCCCAGGCCAAGTCGCAATTACGCATGAGACCCGCCTTCTATTTCTAGCGTTTTATTGTCACAACCTCGCAGGCAATTATATAGGTTAA 5238 41.91 MKADSLTTHKLAVLHPVRPFIRGSFPRLKLFSSFAFIPKGSPRPGSVRLPQNSCFKGVRYDCPVMGATELSDLEDVDLLVEMCITHTLPPALTLKQGLESISEAIEKLKLESPRSSHGVFRFQVAVPPSTRALLWFCCQPESSEVYPIFFLSNEKDATIKSLYLNDTRGVFGIGTAIYFASLASTSSKRSTLKRFLMNDSAPIMAYGFVNANTGETSSLKSEAGHSFFCVPQIELSEYEGISVLSATLAWGESFPCTFEEALHSLGSSIYQISTNFPSIENCRYKYIRSSLTASKFVDGTNQMAYMKVLSVAGESFRNGIMEMESALSHQFCIRVSPSVAVACNMLDHINKTGNSEQEHANINALWASLIVEECSRLGLTYFCIAPGSRSSPLAIAAASHPLMTCIACFDERSLAFHAIGYAKGSHSPAVVITSSGTAVSNLLPAVVEASQDFLPLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPAPTDQIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWLSSTEVFTKYIRLEASPMSIDSFGQMAEVLKVIRGARKGILLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGLRLRKSLSAFLEMENNFFFVDHLDHTLLSESVRKWLNFDVIIQIGSRVTSKRVSKMLEDCSPCSYIMVDKHPGRHDPSHIVTHRIQSTVLEFVGCLLKADFPLNRNKWTATLRALNLMVEWEIQFQISANYSLSEPQVAQVISEALPFDSVLFLGNSMPIRDVDMYAYGWSKCNDSVAARPLNLRLPFCWIWTSGNRGASGIDGLLSTAVGFSVGCNKRVLCVVGDVSFLHDTNGLAILNQRMTRKPVTVVVINNNGGAIFSLLPIKDKVEAAILDQFFHTSHKVSLRSLCVAHGLKHLHVRTKMELQDALFMSHHEENDCIIEVESSIDANTAFHSVLRKFTCQAVEHGFSRLYSEESVSPGLFLCKISRMECTLFRIPLCAPPTTSSGSIDQVSRKFFREGFILSLFLEDGSLGLGEVSPLDIHRENLLDVEEQLKCLIHILKGAEINSSIPLLRGSFSSWICHELGIPPSSIYPSVRCGLEMAVLNAIAGIKGCSLLDVLQHRLDEEKNLTTSSKVQICGLLDSGGTPSEVARVAKTLVEEGFPAIKLKVARQRNVMYDAAVVQEVRKKLGNQIELRVDANRNWSYEEAILFSSLVKDCGLQYIEEPVMDEDAIIKFCEESGLPVALDETVDHIQDNPVKELAKYAHPGIVAIVIKPSVIGGFENAALVARWAQQHGKMAVVSAAFESGVGLSGYIHLSCYLDLQNAEVRKLMNIQPAPSIAHGLGTYRWLEEDVTVNPLRIRRDPYSGIIEASVAEANRLLNSFEINQKFVCRKFTEEQVRMFKFSVDLKGFSYSIKVLEVGQRTNDNVLFFLHGFLGTGEDWITIMKGVSGSARCISLDLPGHGESTTQKNDCDVHGLEEPSFSMEVVAGLLYKLIHHLAPGKVIVNLVGYSMGARIAMYMALRFGDKIGRAVIISGSPGLKDKMARRIRRVKDDSRARILKVYGLQSFLEAWYCGELWKSLREHPHYSQIIASRLKHDDVQHLAKALSDLSIGRQPQLWDELKYCKTPLSFIVGEKDTKFKTIAQKILSQIDMDKKIKDEPIVDLHEIVEIPDSGHAVHLENPLAVINALSRFLIRSRTHCSYNSDFPGQVAITHETRLLFLAFYCHNLAGNYIG 1745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33170168 33187870 + CaPI482276_05g025350.1 Cam05g2535 127939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2535 1745 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 756 949 IPR029061 -
Cam05g2535 1745 Hamap 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 360 967 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Cam05g2535 1745 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 360 540 IPR029061 -
Cam05g2535 1745 SUPERFAMILY Enolase N-terminal domain-like 992 1127 IPR029017 -
Cam05g2535 1745 CDD TPP_PYR_MenD 368 529 - -
Cam05g2535 1745 SFLD o-succinylbenzoate synthase 993 1370 - -
Cam05g2535 1745 CDD TPP_SHCHC_synthase 757 952 - -
Cam05g2535 1745 Gene3D - 573 749 - -
Cam05g2535 1745 Pfam Middle domain of thiamine pyrophosphate 546 778 IPR032264 -
Cam05g2535 1745 Gene3D - 756 966 - -
Cam05g2535 1745 NCBIfam 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 366 837 IPR004433 GO:0009234(InterPro)|GO:0030976(InterPro)|GO:0070204(InterPro)
Cam05g2535 1745 Pfam Enolase C-terminal domain-like 1158 1330 IPR029065 -
Cam05g2535 1745 SFLD Enolase 993 1370 - -
Cam05g2535 1745 Gene3D - 1130 1375 IPR036849 -
Cam05g2535 1745 SMART MR_MLE_2 1155 1251 IPR013342 -
Cam05g2535 1745 Pfam alpha/beta hydrolase fold 1437 1548 IPR000073 -
Cam05g2535 1745 SUPERFAMILY alpha/beta-Hydrolases 1424 1704 IPR029058 -
Cam05g2535 1745 ProSitePatterns Mandelate racemase / muconate lactonizing enzyme family signature 2. 1203 1234 IPR018110 GO:0009063(InterPro)
Cam05g2535 1745 PANTHER 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE-1-CARBOXYLATE SYNTHASE 103 1708 - -
Cam05g2535 1745 Gene3D alpha/beta hydrolase 1428 1704 IPR029058 -
Cam05g2535 1745 Gene3D - 992 1129 IPR029017 -
Cam05g2535 1745 SUPERFAMILY DHS-like NAD/FAD-binding domain 522 739 IPR029035 -
Cam05g2535 1745 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 368 479 IPR012001 GO:0030976(InterPro)
Cam05g2535 1745 Gene3D - 358 554 - -
Cam05g2535 1745 SUPERFAMILY Enolase C-terminal domain-like 1151 1371 IPR036849 -
Cam05g2535 1745 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 803 936 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Cam05g2535 1745 NCBIfam o-succinylbenzoate synthase 1025 1335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2535 K14759 - - csv:101217012 3132.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1016 . . . . . . . . Cmo04g01638 . . . Car04g01619 . . . Cpe01g01391 Bhi07g01424 . . . . . . Cla05g02365 Cam05g2535 Cec05g2564 Cco05g2603 Clacu05g2531 Cmu05g2391 Cre05g2507 . . . . Lsi04g00326 . Chy10g01084 Cme10g00326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005896 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 2 37