Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2537 ATGGGGTTATGGAGTACTGAAAGTGGTACATTATCTGAAATGGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATAGCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAATTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAACGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTATTACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCAGTATCCGGAACTGGAGGACAATCTCAAAGAAACATGGTTAACAGTGAATCTTCCAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAAAATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCGGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCCCTGCAACAAACTACGGTTTCAGCTAAGGACGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCCAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTGCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATAATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGGATCTGATTCACCAGGCAACACAAAAGTTGAACATTGA 1590 43.4 MGLWSTESGTLSEMGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNSIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVLPERWDEIPRNGLGSVSGTGGQSQRNMVNSESSKPLSLTNEHGATERGSPKNGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHNGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEGSDSPGNTKVEH 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33213339 33216586 + CaPI482276_05g025370.1 Cam05g2537 127941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2537 529 MobiDBLite consensus disorder prediction 175 331 - -
Cam05g2537 529 FunFam Basic helix-loop-helix transcription factor 340 412 - -
Cam05g2537 529 CDD bHLH_AtBPE_like 333 418 - -
Cam05g2537 529 MobiDBLite consensus disorder prediction 264 278 - -
Cam05g2537 529 MobiDBLite consensus disorder prediction 304 323 - -
Cam05g2537 529 Pfam Helix-loop-helix DNA-binding domain 346 394 IPR011598 GO:0046983(InterPro)
Cam05g2537 529 MobiDBLite consensus disorder prediction 179 211 - -
Cam05g2537 529 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 411 IPR036638 GO:0046983(InterPro)
Cam05g2537 529 MobiDBLite consensus disorder prediction 217 245 - -
Cam05g2537 529 Gene3D - 340 413 IPR036638 GO:0046983(InterPro)
Cam05g2537 529 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983(InterPro)
Cam05g2537 529 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 505 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam05g2537 529 MobiDBLite consensus disorder prediction 279 295 - -
Cam05g2537 529 SMART finulus 349 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0745 Cam-Chr1:8247490 Cam05g2537 Cam-Chr5:33213339 1.50E-107 dispersed
Cam05g2537 Cam-Chr5:33213339 Cam05g2849 Cam-Chr5:35551208 3.00E-44 dispersed
Cam05g2537 Cam-Chr5:33213339 Cam02g0519 Cam-Chr2:5910378 6.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52023 PF00010 HLH 5.80E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2537 - - - 0.0