Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2539 ATGTCCAGAGCAATGACGACAAAGCCAATACTGTCTTTGGCCGAACTTATCTTAGTTTCCATCTCAGAAATCGTAGATTCTACAGAGTACACTGAAGAAGAACATGGGAAATTGATTGAGATTGGAAGCTACTTTTATCGAGCAGCTCTGGCTGTTGTGGAGTTGCAGGGAATAGATCCAATGCCATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCATGCAAAGGAACTAGTGGAAAAGTTCCTAAATGGCATTCAACTAGTCTGTGATCCAATTACCATTATAAATCCACTAGAAGAGGTGATAAAGGAAATGGGTGAATGCTTGAACAAAATAGCGACCGCTACATTTGAGGAGCAGAATTATGTGAAAATGGCAATTCTATCACTTTCAGATGAGATGAAGAATATATCCACTAAAATTGTCCAAGCTCAAGCCATGATGAACATGCAAGAGATTAAAACTTCTTTGAAGGAACAATCAGAAAAAGAACTAGAAGTTATAGAGAAAGATCTATACCCCATTGATATGGACTGGGACACAAACAATACACAATCCCCAGTTGTATCGGAGTTGAGCGAAGGTGTTACAAATACAAATGGAAGAGGAAACCAAATGAAGTATAGCAAGGTTACATCAGCCATGGCAGAACTACCCTCAGTGACCCATTACATAGAACCTCTCTTTGAGACCTTCTTCTGTCCATTGACAAAGAATATCATGGACGATCCAGTTAGCTTAGAAACGGGAGTGTCATATGAAAGACAAGCAATTGTTGAGTGGCTTAAAGAGTTCGAAGAATCCGAGGAAATTTTCTGCCCAGTCACAGGGCAAAAGCTTGTGTCCAAAGCTTTTAATTCCAACAGAGCTCTGAAGTCTACAATAGACAAATGGAAGGAACGCAATGAGATAGCAACAATCAAAGTTGCCCAGGCCGCTCTGTCTTTAGCCAGTTCAGATGAAATGGTGCTTGAGGCAATCAAAGACCTGTCGAGTATCAGCAAAGGGAAGCAGTTCAACATAGAACGGATCTTCAATTTTGACATGTTACCTTTGCTCGCTAACTTTTTGGAGTACAGAGACAGAGACGTTAGATATGCAGTTCTAGAGCTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGATAATGATCTGTAACCAATTGGACGTATCAACAATAATCAATCTATTATCAAGTAGTCACAGGTCCATTCGGGATAGAGCCTTGCTTCTGTTGTTTGAGCTTTCAAGATCCCAGTCATTGTCAGATCCAATTGGTTCAGTAACTGGGGGGATTCCAATGCTGATCATCATGAAGGACAATAGGTCCGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGAAATCTCCAACGAATATCAAGCATATGGCAGAAGGTGGACTCATGGAACCCCTCATAAGGCATCTTACTGAAGGTAGTGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATTGTCATTAGACATGACTGTATGGCATATGTAGCTGAGAGGGCCTCTTCAGTTCTTGTCAAGATGGTGCACGAGGGAGATACATTCGTCCGCAAGGCAGCATTTAAAGCTCTATTGCAAATTTCATCTCACAGGCCTAATGGTAAAACACTTGCAAAAGCTGGAGCTGTACAAGTCATGGCTGAAGAGATGTTCACTCGTACCATTTGTGATGAACTTAATGATCCAAAAGCAGATGCAACTCAAATACTGGCAAATATATGCGAATCCTGTCTTGATCTTGGGACACTTCAAGTTAACGCTCATGGCTACACTATGAGTTCAGATTATGTAGTCTACAACATTATCGACTTGCTCAAGAACTCAACTCCAGATGAATCTAAATTTAGCACGAGTGTCATCAGCATACTATTATGCTTGACAAAATCTCCAAAACCAATGGACACCCTTGTTTCGGGTGTAAAAAACACTGAAGCATGTGATAACCTCATATATTTCATCAGTAGTCCAGATGAAGAACTTAGAGCTGCAGCAATAAAACTGCTCATATCGCTGTCCCCTTACATGGGCTTCCCAATGGCAGAAAGACTCTGCAAAGCCAGTGACCAAGTGGAGAACCTTACCAGTAGCATTACCTTGACAAACCAAATCACAGAGAAGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACGAGAGCCTAGCTCTCAACACCATGATTGTAAACAAGAACATCGTGCCCAAGCTCCTGCAAACAATCATTCAAATACAAAGCAGTGGAACAGGAATGAGCAGGTATGCAAGTGCTTTACTAGAAGGTTCGGTGGGAATTCTTGTCAGATTTACAGCAACACTTTATGACCCGCAAATGCTGTTTCTGGCAAAAATTCACAATTTTACATCAGTATTAACTAACCTGCTCACTCAAACATCAAGTGATGAAGTTCAAAGGCTATCCGCCATTGGGTTGGAGAAACTATCATCAGCATCCGCGAGTCTATCCAAGCCCCTGAACATTAAAAGCAACAAGATCATGAAATTTCTCCACTTACCCAAGCTTCTATCGCTAGGTCCATCAAAGAAGGGTTACTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCGAAAGCAATTGAAAAGCTATTGACGTGTTTAGACAATGAGAACGAAGAGGTAGTTGAGGCAGCTTTGTCCGCCATTTGTACGCTTGTGGATGAGAAAGTGGATCTGGACAGAAGTGTGAGCCTGCTGAACGAATTTGACACAATAAGGCATGTCCTGAATGTGGTGAGAATGCATAAGCAAGAATCTGTGTGGCATAAATCATTTTGGTTGATCGAGAAGTTCTTGATCAAGGGTGGGGAAGAGTCACTTTCCAATATATCACAGGACAGATCGTTGCCTGCAATATTGGCTACTGCTTCCCATCAAGGGGACAGCGAGACGAGGCGAATAGCAGAAAAGATATTGACCCATTTGAATATGGGTAGTGGAAACGCCCCACCTATATATGCCCTCTGTTTGAAGTTGAATAAATCTCGATGTCGACTTTTTCTCTATATTCAGGAGTGGCTAGGTGAAAGATCAAAGGTGAGAACAAAACTTATATTATCTAGAGTGGTTTCAGCAGCAGGAATCATTGGTCTTCCTTTGAAGAAAATGGCTTCTTTCTCGGTGGAGGATTTTGTGGGAAATGGGGTTCTTAAGGATCTGCTTCCCACTTTGCTGGATGAAGGCTGGGATGATGTACCAACCTTGAAGGTCATGAATTCCGAGGATATGGATGCAATAAATATGACACAACAACAAAAGGAAGCAATGGAGATAAGAACTTACCTGCATGACAGATCTCTGATGCAGTATGCAGATAGGCTAGAGTCCTCCGGGAAATGTTTGCCTGAACTTCTAAGCTTAAGCGTTGAAGATTTAACATCTCAATTCCGTATGAAGAGAGGCCATATTGCACGTTTCATTGATAGAAATAGTTCGTGTGTGGATCCCTTGACCAAAAGGTTTGATACCCCTTCCCCATCTACAAGCATCAAGAGGACTTATCAGTCTAACAACTCAAAGAGGATGCAGAGTATGAGAAGCCGAACCTTTCAAGATAAAACAGTTGAGCAAGCACTGAGCGAATTTAAGATCGAAGATGGGTATGTGTTCAAGGGGATTGTTGCAGCAGAACCAGCTGGTCATAGAGCATGCGGTTGTGTGCAACCACCTCCTATTGTTGATAAAGTTGCTCCTTATTCTGCCATTGAAAACATCTCCATTCAGAAATTAACTCCAGAATATAAGATTGGAATGGAGCGTTTGGTGAAGACTAAGACTCCCCCAATGAAGGCATCAGCACTGTGGCAGGATAAGCCAGCCATTATCCTCTGTATTAGACGTCCTGGGTGCATCATGTGCAGAGCAGAAGCTCACCAGCTATATGCCAGAAAACCGATATTTGATGCACTAGGATACCAACTATTCGCTGTAATTCATGAACACATAGAATCAGAGGTGAAAGACTTCTGGCCCAGGTACTGGGGAGGCGCTGTAATCTTTGACCAAGGTAGAGGATTCTTCAAAGCTCTAGGTGGTGGTAAATTAATGAAGGAAAAGTTCCTGTCAGGATTTGTTTTCAACCCTCGGGCAATAGCAAACTATAAGCGTGCAAAAGCAATGGGAGTGAAGCAAAACTTCAATGGAGAAGGGGAAATTAAGGGTGGTCTGTTCATTCTTGGCTCAGCTAAGCGTGGTATTGCTTACCAGTTTATTGAGCGGAACTTCGGGGACTGGGCGCCTCTTTCTGAAGTAATTGAGATCTGTACAAAAATACAGAGCCAGCCACAAGCTCCAGGGGTATCCATCAAACCATCCCAAGAAGATAACCGAAGTTCGTCCCTAGAGTAA 4446 42.11 MSRAMTTKPILSLAELILVSISEIVDSTEYTEEEHGKLIEIGSYFYRAALAVVELQGIDPMPFDEILQSLNKSINHAKELVEKFLNGIQLVCDPITIINPLEEVIKEMGECLNKIATATFEEQNYVKMAILSLSDEMKNISTKIVQAQAMMNMQEIKTSLKEQSEKELEVIEKDLYPIDMDWDTNNTQSPVVSELSEGVTNTNGRGNQMKYSKVTSAMAELPSVTHYIEPLFETFFCPLTKNIMDDPVSLETGVSYERQAIVEWLKEFEESEEIFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVAQAALSLASSDEMVLEAIKDLSSISKGKQFNIERIFNFDMLPLLANFLEYRDRDVRYAVLELLHQMAEINEDNKIMICNQLDVSTIINLLSSSHRSIRDRALLLLFELSRSQSLSDPIGSVTGGIPMLIIMKDNRSDEFASEKADETLRNLEKSPTNIKHMAEGGLMEPLIRHLTEGSEWMRIEMASYLGEIVIRHDCMAYVAERASSVLVKMVHEGDTFVRKAAFKALLQISSHRPNGKTLAKAGAVQVMAEEMFTRTICDELNDPKADATQILANICESCLDLGTLQVNAHGYTMSSDYVVYNIIDLLKNSTPDESKFSTSVISILLCLTKSPKPMDTLVSGVKNTEACDNLIYFISSPDEELRAAAIKLLISLSPYMGFPMAERLCKASDQVENLTSSITLTNQITEKQALSATFLAKLPHESLALNTMIVNKNIVPKLLQTIIQIQSSGTGMSRYASALLEGSVGILVRFTATLYDPQMLFLAKIHNFTSVLTNLLTQTSSDEVQRLSAIGLEKLSSASASLSKPLNIKSNKIMKFLHLPKLLSLGPSKKGYLRVCPVHKGACSSQNTFCLVHAKAIEKLLTCLDNENEEVVEAALSAICTLVDEKVDLDRSVSLLNEFDTIRHVLNVVRMHKQESVWHKSFWLIEKFLIKGGEESLSNISQDRSLPAILATASHQGDSETRRIAEKILTHLNMGSGNAPPIYALCLKLNKSRCRLFLYIQEWLGERSKVRTKLILSRVVSAAGIIGLPLKKMASFSVEDFVGNGVLKDLLPTLLDEGWDDVPTLKVMNSEDMDAINMTQQQKEAMEIRTYLHDRSLMQYADRLESSGKCLPELLSLSVEDLTSQFRMKRGHIARFIDRNSSCVDPLTKRFDTPSPSTSIKRTYQSNNSKRMQSMRSRTFQDKTVEQALSEFKIEDGYVFKGIVAAEPAGHRACGCVQPPPIVDKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKASALWQDKPAIILCIRRPGCIMCRAEAHQLYARKPIFDALGYQLFAVIHEHIESEVKDFWPRYWGGAVIFDQGRGFFKALGGGKLMKEKFLSGFVFNPRAIANYKRAKAMGVKQNFNGEGEIKGGLFILGSAKRGIAYQFIERNFGDWAPLSEVIEICTKIQSQPQAPGVSIKPSQEDNRSSSLE 1481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33222124 33230761 - CaPI482276_05g025390.1 Cam05g2539 127943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2539 1481 ProSiteProfiles U-box domain profile. 230 308 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2539 1481 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 1010 IPR052608 -
Cam05g2539 1481 Gene3D - 791 1093 IPR011989 -
Cam05g2539 1481 Pfam Armadillo/beta-catenin-like repeat 880 918 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 SMART arm_5 340 380 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 SMART arm_5 466 506 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 SMART arm_5 880 920 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 SMART arm_5 792 833 IPR000225 GO:0005515(InterPro)
Cam05g2539 1481 Pfam U-box domain 233 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2539 1481 Gene3D - 316 511 IPR011989 -
Cam05g2539 1481 MobiDBLite consensus disorder prediction 1462 1481 - -
Cam05g2539 1481 SUPERFAMILY ARM repeat 316 641 IPR016024 -
Cam05g2539 1481 SUPERFAMILY RING/U-box 217 310 - -
Cam05g2539 1481 Gene3D - 512 689 IPR011989 -
Cam05g2539 1481 SMART Ubox_2 234 301 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2539 1481 ProSiteProfiles HEAT repeat profile. 352 388 IPR021133 -
Cam05g2539 1481 MobiDBLite consensus disorder prediction 1190 1213 - -
Cam05g2539 1481 SUPERFAMILY ARM repeat 618 1014 IPR016024 -
Cam05g2539 1481 CDD RING-Ubox_PUB 233 286 IPR045210 -
Cam05g2539 1481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 315 IPR013083 -
Cam05g2539 1481 Pfam AhpC/TSA antioxidant enzyme 1325 1440 IPR032801 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2539 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2539 Cam-Chr5:33222124 Cam06g0858 Cam-Chr6:12193031 2.10E-10 dispersed
Cam08g1383 Cam-Chr8:20113040 Cam05g2539 Cam-Chr5:33222124 2.40E-115 transposed
Cam01g0623 Cam-Chr1:6822297 Cam05g2539 Cam-Chr5:33222124 2.80E-06 wgd
Cam03g0697 Cam-Chr3:7873622 Cam05g2539 Cam-Chr5:33222124 8.60E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29