Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2544 ATGGGTGCATCGGAGAAAATTATGCTACTTTGCTATGCTCGTTGTCGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCATATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGTGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCAGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATACGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGATAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCAGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCGAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTGCAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAAATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAAGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACCATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATAAATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATCGATCCATTCCTTGCTATGATAACTTGTCCTTTGGCATAAAAGTTAGGAATCCTCTTCATTTGCTAAAACTTTCAAGGGAAGTTAACGATCAGTTATATGACTTGCTTGGTTATGTTGCAGGGTGTAAGGTATATAGCTTCTCAAATCCTCATGTGGGAGATTATGATGTGCAAGCCCCTTCCAACTGCTGTCATGGAGGTGAAAAATCTATAGACATAGCTTCTCAAATCCTCATGTGGGAGATTATGATGTGCAAGCCCCTTCCAACTGCTGTCATGGAGGAATTCTCGGAACCTGAGCAGCATCACTTTCAGAACCCTGTCTGTATTTGTTAA 2826 39.38 MGASEKIMLLCYARCRILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFQHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDTLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYCRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCINGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNAFHQQGDNSLVLEFLAMVVKSGFISHRSIPCYDNLSFGIKVRNPLHLLKLSREVNDQLYDLLGYVAGCKVYSFSNPHVGDYDVQAPSNCCHGGEKSIDIASQILMWEIMMCKPLPTAVMEEFSEPEQHHFQNPVCIC 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33256684 33262751 - CaPI482276_05g025440.1 Cam05g2544 127948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Cam05g2544 941 Pfam PPR repeat 764 792 IPR002885 -
Cam05g2544 941 Pfam PPR repeat 727 755 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 657 690 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 764 796 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 518 550 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 622 655 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 412 445 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 692 724 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 377 410 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 447 480 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 587 620 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 552 585 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 272 306 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 307 341 IPR002885 -
Cam05g2544 941 NCBIfam pentatricopeptide repeat 727 760 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Cam05g2544 941 SUPERFAMILY HCP-like 491 710 - -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 760 794 IPR002885 -
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 484 600 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 74 228 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cam05g2544 941 Pfam PPR repeat 370 400 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 260 331 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 402 473 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 332 401 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 724 IPR002885 -
Cam05g2544 941 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 417 663 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 719 834 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 Gene3D Tetratricopeptide repeat domain 601 718 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Cam05g2544 941 SUPERFAMILY TPR-like 319 508 IPR011990 GO:0005515(InterPro)
Cam05g2544 941 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Cam05g2544 941 Pfam PPR repeat family 269 317 IPR002885 -
Cam05g2544 941 Pfam PPR repeat family 584 633 IPR002885 -
Cam05g2544 941 Pfam PPR repeat family 654 702 IPR002885 -
Cam05g2544 941 Pfam PPR repeat family 410 458 IPR002885 -
Cam05g2544 941 Pfam PPR repeat family 515 563 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2544 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1000 . . . . . . . . Cmo04g01645 . . . Car04g01622 . Sed07g2016 . Cpe01g01394 Bhi07g01446 Tan04g0955 Cmetu04g0673 . . . . Cla05g02374 Cam05g2544 Cec05g2576 Cco05g2615 Clacu05g2543 Cmu05g2402 Cre05g2519 . . . . Lsi04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009359 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 2 32