Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2558 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 474 44.94 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33354812 33356335 - CaPI482276_05g025580.1 Cam05g2558 127962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2558 157 FunFam protein CRABS CLAW isoform X3 92 151 - -
Cam05g2558 157 SUPERFAMILY HMG-box 86 138 IPR036910 -
Cam05g2558 157 MobiDBLite consensus disorder prediction 66 99 - -
Cam05g2558 157 Pfam YABBY protein 15 140 IPR006780 GO:0007275(InterPro)
Cam05g2558 157 MobiDBLite consensus disorder prediction 66 88 - -
Cam05g2558 157 CDD HMG-box_SF 101 137 - -
Cam05g2558 157 Gene3D High mobility group box domain 89 142 IPR036910 -
Cam05g2558 157 PANTHER PROTEIN YABBY 6-RELATED 13 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2558 Cam-Chr5:33354812 Cam05g2575 Cam-Chr5:33469589 1.40E-77 dispersed
Cam05g2558 Cam-Chr5:33354812 Cam01g0388 Cam-Chr1:4275557 1.30E-22 transposed
Cam05g2558 Cam-Chr5:33354812 Cam11g0240 Cam-Chr11:3903400 1.30E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52024 PF04690 YABBY 1.00E-42 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2558 K25796 - csv:101219863 249.98