Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2558 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 474 44.94 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33354812 33356335 - CaPI482276_05g025580.1 Cam05g2558 127962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2558 157 FunFam protein CRABS CLAW isoform X3 92 151 - -
Cam05g2558 157 SUPERFAMILY HMG-box 86 138 IPR036910 -
Cam05g2558 157 MobiDBLite consensus disorder prediction 66 99 - -
Cam05g2558 157 Pfam YABBY protein 15 140 IPR006780 GO:0007275(InterPro)
Cam05g2558 157 MobiDBLite consensus disorder prediction 66 88 - -
Cam05g2558 157 CDD HMG-box_SF 101 137 - -
Cam05g2558 157 Gene3D High mobility group box domain 89 142 IPR036910 -
Cam05g2558 157 PANTHER PROTEIN YABBY 6-RELATED 13 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2558 K25796 - - csv:101219863 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2558 Cam-Chr5:33354812 Cam05g2575 Cam-Chr5:33469589 1.40E-77 dispersed
Cam05g2558 Cam-Chr5:33354812 Cam01g0388 Cam-Chr1:4275557 1.30E-22 transposed
Cam05g2558 Cam-Chr5:33354812 Cam11g0240 Cam-Chr11:3903400 1.30E-22 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2575 . 7 162 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 9.4e-46 180.3
Cam05g2558 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.2e-38 154.8
Cam01g0388 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cam02g2328 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cam01g0388 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cam06g1215 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Cam11g0240 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.1e-41 164.1
Cam10g0296 . 22 190 C2C2-YABBY Transcription Factor Family AT1G08465 55.0 1.6e-40 162.9
Cam01g0388 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cam10g0296 . 33 190 C2C2-YABBY Transcription Factor Family AT4G00180 56.1 1.3e-38 156.8
Cam05g2741 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 4.2e-39 158.7
Cam06g1215 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cam11g0240 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.2e-61 231.1
Cam02g2328 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cam01g0388 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
Cam10g0296 . 22 190 C2C2-YABBY Transcription Factor Family AT2G26580 50.9 1.8e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52024 PF04690 YABBY 1.00E-42 CL0114 Cam TF