Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2560 ATGTCGTCCGCCGAGAAGGAAAGAGAGACGCAGGTCTACATGGCCAAGCTTGCAGAACAGGCCGAACGCTATGACGAAATGGTGGAGTGTATGAAGAAAGTTGCTAAACTAGACGTTGAGCTAACCGTGGAAGAGAGAAACTTGCTTTCTGTTGGATACAAAAATGTTATAGGTGCTAGACGAGCTTCTTGGCGCATCATGTCCTCGATTGAACAGAAGGAAGAGTCCAAAAGCAATGAGAATAATGTTAAACTTATTAAGAGTTACCGTCAGAAGGTGGAGGAAGAGCTTTCCAAGATCTGTACCGATATTCTGACTATTATTGACAAGCACCTCATCCCTTCTTCAACCTCTTCAGAAGCATCGGTTTTCTATTACAAGATGAAAGGTGACTATTACCGATATCTTGCTGAGTTCAAAACAGATCAAGAAAGAAAGGAGGCAGCTGACCAGTCATTGAAGGGATACGAGACTGCTTCGACCACCGCCAATACCGAACTTCCATCAACTCACCCTATCCGTCTTGGCCTTGCCCTCAACTTTTCTGTCTTCTACTATGAGATTATGAATTCCCCTGAAAGGGCTTGCCACTTGGCTAAACAAGCTTTTGACGAGGCAATTGCAGAGTTGGATACTTTGAGTGAGGAATCATACAAGGACAGTACCCTCATAATGCAGTTGCTGAGAGATAACCTCACTCTCTGGACATCTGATTTACCAGAAGATGGAGGTGAAGAGAACGTCAAAGGTGAGGATTCCAAACCGGCAGCACCAGCCCCCGAGCAGCATTAA 792 45.08 MSSAEKERETQVYMAKLAEQAERYDEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKSNENNVKLIKSYRQKVEEELSKICTDILTIIDKHLIPSSTSSEASVFYYKMKGDYYRYLAEFKTDQERKEAADQSLKGYETASTTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEENVKGEDSKPAAPAPEQH 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33373266 33375714 + CaPI482276_05g025600.1 Cam05g2560 127964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2560 263 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Cam05g2560 263 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Cam05g2560 263 Coils Coil 14 34 - -
Cam05g2560 263 Gene3D - 1 250 IPR036815 -
Cam05g2560 263 MobiDBLite consensus disorder prediction 237 263 - -
Cam05g2560 263 SMART 1433_4 8 250 IPR023410 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Cam05g2560 263 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cam05g2560 263 Pfam 14-3-3 protein 14 236 IPR023410 -
Cam05g2560 263 MobiDBLite consensus disorder prediction 242 263 - -
Cam05g2560 263 PIRSF 14-3-3 2 248 IPR000308 -
Cam05g2560 263 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cam05g2560 263 FunFam 14-3-3 protein epsilon 3 249 - -
Cam05g2560 263 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Cam05g2560 263 Coils Coil 196 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2560 Cam-Chr5:33373266 Cam08g1563 Cam-Chr8:21859106 1.50E-108 dispersed
Cam05g2560 Cam-Chr5:33373266 Cam08g1491 Cam-Chr8:21149472 1.80E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2560 K06630 - csv:101221275 485.723