Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2562 ATGGCTTCGATCACAGCCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCGTCTCCTAATAGAACAGTTCCCGCCAATTATTTCGTTCTTCAATGTCGATCACTTGCTTCTAAAGCTTTGAACTCGCCGTTTTCACCGTTGACGGAGAATCGAATTGTTTCGCCATCGGTGGAACTATCTAGCAAGGCTATTGGGCTCTTAAGTTCTAGACAACCGTTAAAGTCTCGAAGTGTAGTTCGTCTGCCGGTGGTGAGGGCGGCTGCAGCTGAAGCCGACGGAGTTTCCGATGGGTTGAATAGCCCTTCGAAGAGCTTTGCTGCAAGATTCCCAGCACTCATTACTGGTTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATCTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGCTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTCCCAAAACGTGCCCCGATAGATAAGGAGCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAATGCTGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATGGCATCACTAACGGAACTTTCCTTCAATTGGACTGGCTTTGTGAGTGCAATGATTTCAAACGTTGCATTTACCTATAGAAGTATCTATTCGAAGAAAGCAATGACAGGAATGGACAGCACAAACGTGTATGCATACACCACAATAATCGCTCTTTTGTTTTGCATTCCTCCTGCAGTTATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAGGGATGCCATTGCCAAAGTGGGTCTACAAAAGTTCCTGTCTGACCTTTTCTGGATCGGCATGTTTTATCATCTATACAATCAGCTTGCTGCTAATACTCTTGAACGTGTTGCACCATTAACACACGCTGTAGGAAACGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCTGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAACAAAAACGGAGGGCTGCTAAAATTCCATCATCATAG 1272 42.53 MASITAVIQSPIHRLPSFRLSSPNRTVPANYFVLQCRSLASKALNSPFSPLTENRIVSPSVELSSKAIGLLSSRQPLKSRSVVRLPVVRAAAAEADGVSDGLNSPSKSFAARFPALITGFYFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGAGYCLISWAVGLPKRAPIDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSMASLTELSFNWTGFVSAMISNVAFTYRSIYSKKAMTGMDSTNVYAYTTIIALLFCIPPAVMIEGPQLLQHGFRDAIAKVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPSS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33385121 33389029 + CaPI482276_05g025620.1 Cam05g2562 127966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2562 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 297 405 - -
Cam05g2562 423 Pfam Triose-phosphate Transporter family 118 404 IPR004853 -
Cam05g2562 423 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 116 414 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cam05g2562 423 PANTHER SOLUTE CARRIER FAMILY 35 112 405 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cam05g2562 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 155 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2388 Cam-Chr1:35829773 Cam05g2562 Cam-Chr5:33385121 1.40E-148 dispersed
Cam05g2562 Cam-Chr5:33385121 Cam09g1964 Cam-Chr9:34307235 1.10E-52 dispersed
Cam05g2562 Cam-Chr5:33385121 Cam10g0516 Cam-Chr10:7641485 9.80E-62 transposed
Cam05g2562 Cam-Chr5:33385121 Cam05g1627 Cam-Chr5:23270059 9.80E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2562 K15283 - csv:101221040 696.041