Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2575 ATGGATTTGGTTCAACCTTCCGACCACCTCTGTTATGTCAAATGCAACTTCTGTAACACTCTCCTTGCGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATTCGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 498 44.58 MDLVQPSDHLCYVKCNFCNTLLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33469589 33470880 + CaPI482276_05g025750.1 Cam05g2575 127979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2575 165 MobiDBLite consensus disorder prediction 74 107 - -
Cam05g2575 165 PANTHER PROTEIN YABBY 6-RELATED 6 161 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
Cam05g2575 165 Gene3D High mobility group box domain 97 150 IPR036910 -
Cam05g2575 165 FunFam protein CRABS CLAW isoform X3 100 159 - -
Cam05g2575 165 MobiDBLite consensus disorder prediction 74 96 - -
Cam05g2575 165 Pfam YABBY protein 6 148 IPR006780 GO:0007275(InterPro)
Cam05g2575 165 SUPERFAMILY HMG-box 94 146 IPR036910 -
Cam05g2575 165 CDD HMG-box_SF 109 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2558 Cam-Chr5:33354812 Cam05g2575 Cam-Chr5:33469589 1.40E-77 dispersed
Cam05g2575 Cam-Chr5:33469589 Cam06g1215 Cam-Chr6:23391851 5.90E-31 dispersed
Cam05g2575 Cam-Chr5:33469589 Cam11g0240 Cam-Chr11:3903400 2.00E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52025 PF04690 YABBY 4.70E-55 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2575 K25796 - csv:101219863 294.278