Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2576 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCATCCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGATGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTCAATACAATTATGGGATCACACATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTAACTCTAATGGAGGACTAGAAATGAAAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTTTGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCCCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGGGATTAA 1359 42.53 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSSRVAEKQRERSLKFQVPTERRRSKRDLESEDGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENRRLQYNYGITHQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASNSNGGLEMKEVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALLDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGRWD 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33477370 33478728 + CaPI482276_05g025760.1 Cam05g2576 127980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2576 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cam05g2576 452 MobiDBLite consensus disorder prediction 337 373 - -
Cam05g2576 452 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cam05g2576 452 SUPERFAMILY beta-beta-alpha zinc fingers 98 412 IPR036236 -
Cam05g2576 452 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cam05g2576 452 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Cam05g2576 452 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cam05g2576 452 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 133 - -
Cam05g2576 452 SMART c2h2final6 9 31 IPR013087 -
Cam05g2576 452 SMART c2h2final6 390 412 IPR013087 -
Cam05g2576 452 SMART c2h2final6 97 119 IPR013087 -
Cam05g2576 452 Gene3D Classic Zinc Finger 1 70 - -
Cam05g2576 452 MobiDBLite consensus disorder prediction 33 79 - -
Cam05g2576 452 MobiDBLite consensus disorder prediction 175 209 - -
Cam05g2576 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Cam05g2576 452 Pfam C2H2-type zinc finger 390 412 IPR013087 -
Cam05g2576 452 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cam05g2576 452 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cam05g2576 452 MobiDBLite consensus disorder prediction 33 67 - -
Cam05g2576 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cam05g2576 452 MobiDBLite consensus disorder prediction 337 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2576 Cam-Chr5:33477370 Cam07g0743 Cam-Chr7:17566947 7.60E-12 dispersed
Cam04g1226 Cam-Chr4:26292608 Cam05g2576 Cam-Chr5:33477370 2.20E-27 wgd
Cam05g2576 Cam-Chr5:33477370 Cam06g1718 Cam-Chr6:28515895 6.80E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52026 PF13912 zf-C2H2_6 6.30E-09 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2576 - - - 0.0