Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2592 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGACTTCTATGGAGTCACTCTTCGGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACTTCCTTGCCGGTCGAGAAGACTAAAGATCAGCTGATGCAACCTCCGTTACAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACCGAATAAGCGGGCAAAGGATGTCAGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCGAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAAATTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG 1476 45.93 MGDDDEQPPPPPPSKSLRPTINLPPRTSMESLFGGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQLMQPPLQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQPNKRAKDVRNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKISSNNTDPGNSRQQPAGLLLLKEEQIT 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33567905 33570536 + CaPI482276_05g025920.1 Cam05g2592 127996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2592 491 MobiDBLite consensus disorder prediction 465 491 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 263 281 - -
Cam05g2592 491 FunFam WRKY transcription factor 33 364 430 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 1 36 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 295 364 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 312 326 - -
Cam05g2592 491 SMART WRKY_cls 197 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 SMART WRKY_cls 377 436 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 FunFam WRKY transcription factor 182 257 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 1 19 - -
Cam05g2592 491 Gene3D WRKY domain 362 438 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 Gene3D WRKY domain 184 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 MobiDBLite consensus disorder prediction 247 281 - -
Cam05g2592 491 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 MobiDBLite consensus disorder prediction 328 352 - -
Cam05g2592 491 MobiDBLite consensus disorder prediction 150 208 - -
Cam05g2592 491 Pfam WRKY DNA -binding domain 378 435 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 SUPERFAMILY WRKY DNA-binding domain 196 256 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 ProSiteProfiles WRKY domain profile. 198 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 127 451 IPR044810 GO:0003700(InterPro)
Cam05g2592 491 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2592 491 MobiDBLite consensus disorder prediction 150 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2592 Cam-Chr5:33567905 Cam10g0374 Cam-Chr10:6010127 1.60E-71 dispersed
Cam02g1987 Cam-Chr2:32947815 Cam05g2592 Cam-Chr5:33567905 3.00E-61 transposed
Cam03g0015 Cam-Chr3:1142483 Cam05g2592 Cam-Chr5:33567905 5.60E-68 transposed
Cam06g1375 Cam-Chr6:25236521 Cam05g2592 Cam-Chr5:33567905 6.10E-42 transposed
Cam10g2212 Cam-Chr10:35470895 Cam05g2592 Cam-Chr5:33567905 2.80E-65 transposed
Cam11g0481 Cam-Chr11:6338641 Cam05g2592 Cam-Chr5:33567905 1.20E-119 transposed
Cam10g1134 Cam-Chr10:24459105 Cam05g2592 Cam-Chr5:33567905 2.60E-24 wgd
Cam05g2592 Cam-Chr5:33567905 Cam08g1451 Cam-Chr8:20804851 2.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52028 PF03106 WRKY 8.40E-26 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2592 - - - 0.0