Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2614 ATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAGTGGTGCCCAATTCTGA 747 51.14 MASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33721645 33722604 + CaPI482276_05g026140.1 Cam05g2614 128018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2614 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Cam05g2614 248 Gene3D - 156 248 IPR036749 -
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cam05g2614 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cam05g2614 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 CDD DPBB_EXPA_N 25 151 - -
Cam05g2614 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cam05g2614 248 PANTHER EXPANSIN-A15 12 248 IPR002963 GO:0009664(InterPro)
Cam05g2614 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cam05g2614 248 FunFam Expansin 156 248 - -
Cam05g2614 248 FunFam Expansin 15 152 - -
Cam05g2614 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Cam05g2614 248 Gene3D - 13 152 IPR036908 -
Cam05g2614 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cam05g2614 248 SMART dpbb_1 61 146 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2077 Cam-Chr2:33675434 Cam05g2614 Cam-Chr5:33721645 6.90E-103 dispersed
Cam05g2614 Cam-Chr5:33721645 Cam11g0593 Cam-Chr11:7488743 4.60E-112 dispersed
Cam08g1885 Cam-Chr8:24843661 Cam05g2614 Cam-Chr5:33721645 5.70E-97 transposed
Cam11g0988 Cam-Chr11:17050594 Cam05g2614 Cam-Chr5:33721645 3.20E-121 transposed
Cam04g1247 Cam-Chr4:26462635 Cam05g2614 Cam-Chr5:33721645 3.30E-91 wgd
Cam05g2614 Cam-Chr5:33721645 Cam06g1754 Cam-Chr6:28789906 1.10E-116 wgd
Cam05g2614 Cam-Chr5:33721645 Cam09g1863 Cam-Chr9:33177856 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2614 - - - 0.0