Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2628 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCACCCTCGCCGATCCCTCTACCAATTTCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTTCTCAGAGTAGTGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.11 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPPSPIPLPISHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRASQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33790417 33791055 + CaPI482276_05g026280.1 Cam05g2628 128032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2628 212 Gene3D - 115 188 - -
Cam05g2628 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Cam05g2628 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Cam05g2628 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cam05g2628 212 MobiDBLite consensus disorder prediction 117 140 - -
Cam05g2628 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam05g2628 212 MobiDBLite consensus disorder prediction 186 212 - -
Cam05g2628 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Cam05g2628 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2628 Cam-Chr5:33790417 Cam10g0839 Cam-Chr10:18645689 1.20E-31 dispersed
Cam10g1180 Cam-Chr10:25138602 Cam05g2628 Cam-Chr5:33790417 4.20E-43 wgd
Cam04g1259 Cam-Chr4:26541611 Cam05g2628 Cam-Chr5:33790417 6.90E-14 wgd
Cam05g2628 Cam-Chr5:33790417 Cam06g1767 Cam-Chr6:28847832 4.50E-15 wgd
Cam05g2628 Cam-Chr5:33790417 Cam09g1872 Cam-Chr9:33294763 3.90E-43 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.8 1.1e-51 200.7
Cam08g1605 . 22 241 ZF-HD Transcription Factor Family AT4G24660 52.0 5.5e-51 198.0
Cam10g0839 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 2.3e-41 166.0
Cam09g1872 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cam10g1180 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cam01g2000 . 129 335 ZF-HD Transcription Factor Family AT2G18350 53.4 6.3e-51 198.0
Cam08g1605 . 52 245 ZF-HD Transcription Factor Family AT5G65410 50.7 1.4e-45 180.3
Cam09g1872 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.3e-47 186.8
Cam10g1180 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 2.9e-51 199.1
Cam09g1872 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.1e-50 197.2
Cam05g2628 . 2 211 ZF-HD Transcription Factor Family AT5G15210 53.6 5.7e-39 158.3
Cam11g0009 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.9 6.5e-55 211.5
Cam10g1180 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.0e-60 230.7
Cam09g1872 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 2.8e-58 222.6
Cam05g2628 . 3 195 ZF-HD Transcription Factor Family AT3G28920 53.3 4.6e-40 162.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52035 PF04770 ZF-HD_dimer 8.20E-29 No_clan Cam TF