Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2628 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCACCCTCGCCGATCCCTCTACCAATTTCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTTCTCAGAGTAGTGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.11 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPPSPIPLPISHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRASQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33790417 33791055 + CaPI482276_05g026280.1 Cam05g2628 128032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2628 212 Gene3D - 115 188 - -
Cam05g2628 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Cam05g2628 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Cam05g2628 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cam05g2628 212 MobiDBLite consensus disorder prediction 117 140 - -
Cam05g2628 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam05g2628 212 MobiDBLite consensus disorder prediction 186 212 - -
Cam05g2628 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Cam05g2628 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2628 Cam-Chr5:33790417 Cam10g0839 Cam-Chr10:18645689 1.20E-31 dispersed
Cam10g1180 Cam-Chr10:25138602 Cam05g2628 Cam-Chr5:33790417 4.20E-43 wgd
Cam04g1259 Cam-Chr4:26541611 Cam05g2628 Cam-Chr5:33790417 6.90E-14 wgd
Cam05g2628 Cam-Chr5:33790417 Cam06g1767 Cam-Chr6:28847832 4.50E-15 wgd
Cam05g2628 Cam-Chr5:33790417 Cam09g1872 Cam-Chr9:33294763 3.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52035 PF04770 ZF-HD_dimer 8.20E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2628 - - - 0.0