Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g2628 | ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCACCCTCGCCGATCCCTCTACCAATTTCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTTCTCAGAGTAGTGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG | 639 | 52.11 | MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPPSPIPLPISHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRASQSSEQNGGNDSKQST | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33790417 | 33791055 | + | CaPI482276_05g026280.1 | Cam05g2628 | 128032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g2628 | 212 | Gene3D | - | 115 | 188 | - | - | |
Cam05g2628 | 212 | SUPERFAMILY | Homeodomain-like | 121 | 186 | IPR009057 | - | |
Cam05g2628 | 212 | NCBIfam | homeobox domain, ZF-HD class | 128 | 185 | IPR006455 | - | |
Cam05g2628 | 212 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 5 | 56 | IPR006456 | - | |
Cam05g2628 | 212 | MobiDBLite | consensus disorder prediction | 117 | 140 | - | - | |
Cam05g2628 | 212 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 3 | 184 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cam05g2628 | 212 | MobiDBLite | consensus disorder prediction | 186 | 212 | - | - | |
Cam05g2628 | 212 | Pfam | ZF-HD protein dimerisation region | 3 | 57 | IPR006456 | - | |
Cam05g2628 | 212 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 5 | 56 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g2628 | Cam-Chr5:33790417 | Cam10g0839 | Cam-Chr10:18645689 | 1.20E-31 | dispersed | |
Cam10g1180 | Cam-Chr10:25138602 | Cam05g2628 | Cam-Chr5:33790417 | 4.20E-43 | wgd | |
Cam04g1259 | Cam-Chr4:26541611 | Cam05g2628 | Cam-Chr5:33790417 | 6.90E-14 | wgd | |
Cam05g2628 | Cam-Chr5:33790417 | Cam06g1767 | Cam-Chr6:28847832 | 4.50E-15 | wgd | |
Cam05g2628 | Cam-Chr5:33790417 | Cam09g1872 | Cam-Chr9:33294763 | 3.90E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52035 | PF04770 | ZF-HD_dimer | 8.20E-29 | No_clan | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g2628 | - | - | - | 0.0 |