Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2642 ATGCCCTTCCTTTCAACAATAGATGGAGAGTTGACTTTGGAGGATTTTAAGCTCAGACGAGATCCGAGTCATCAGACCAATAAGAAAGCGAGTGCAGGGGGAGTAGATTTAGATCGTGGGCAGTGTATCCAACCTCCCTCAATCCAAATTTACCGGGAGAACAGAGTCTCCGGCAGCCGCCGTTGGACGGTATACCTGCCGACTTCTGGAAAGGGCAAAGAAGAAAGAAAAGTCGACGGGGAAGACGTGGGTCCCACAACCGCCTTTTCCCGAGAAAGAGAAGGAAGAAACATCGGATCGGATTGGAATTGTGAAATTTCGGGCTTTATATTGGTTGTATCTGAGAGAGATATGTTGGAGGATCGCTCCTTTCTAGCGTCGAGGGTGTTCTCAAGCTCTTGCCAGCAAGAAACTCAGTGGGCTTGCTTTAACTTAACATATCGACTCGAGGTTGGAATGGGAAATGGGAAACGCCCGTCAGATCATGATGGCGATGAGTTTGTTAGAACCTCTAGTTCTTGTGGTAGAAACGTCAGACCTCGATCTTCAAGAGATCATCATCCAAATGATGAGTCTGATTCTGGGGATAGTTCTGATTCCGGTTCTCTGATCTCTTCCATTGGTCGGGACAACTCTATTAATTGCTTAATTCGCTGCTCCAGGTCTGATTATGGTTCGATTGCATCCTTGAATCGAAGTTTCCGTTCGTTAATTCGTAGTGGAGAGCTTTACAAACTGAGGCGTTTGAACGGTGTGATTGAGCACTGGGTTTATTTCTCTTGCCATCTTCTGGAGTGGGAAGCTTTTGATCCAATTCAACGCAGGTGGATGCATTTGCCAAGGATGGATTCGAATGAATGTTTCATGTGCTCGGATAAAGAATCCTTGGGAGTGGGAACTGACCTTCTTGTTTTTGGTAAGGATTTAAATTCCCATGTCACTTATAGATATAGTATATTGACAAATTCCTGGTGTCCTGGAGTGAGTATGAACGATCCCAGATGTTTGTTTGGGTCTGCTAGTAAAGGGGAGATAGCAATTTTAGCTGGTGGTTGTGATTCTAATGGCAACATTCTTAACACTGCTGAGCTTTACAATTCCGAGACTAAAACTTGGGTGACACTTCCAAATATGACTAAACCAAGGAAGCTTTGTTCTGGGGTGTTCATGGACAAGAAATTCTATGTTATTGGTGGAGTTGGAGGAAGTGAGGCTAAGGTTCTTACATGTGGTGAAGAGTACGATTTAGAAACTCGAAAATGGACTGAAATTCCCAATATGTCGCCTGGCCGTAGTGCTGCTGCTAGGGACGGTGATATGCCGGCCGCAGCTGAAGCACCGCCTCTTCTTGCTGTGGTGAATAATGAACTCTATGCTGCAGATCACACTGACATGGAGGTTAGGAAATATGACAAACAAAGAAGAGAATGGTTTACAGTTGGGAGGTTGCCTGAAAGAGCAGTTTCAACTAATGGTTGGGGGCTTGCATTTAGAGCGTGCGGCGATAGGCTTATTGTTATTGGTGGACCAAGGGCCATGGGGGAAGGTTTTATAGAGCTTAATTCATGGGTTCCAAGTGAAGGCCCTCCAAGGTGGGATTTGCTTGCAAGGAAACCATCTGCAAATTTTGTGTATAACTGTGCTGTGATGGGATGCTGA 1659 45.27 MPFLSTIDGELTLEDFKLRRDPSHQTNKKASAGGVDLDRGQCIQPPSIQIYRENRVSGSRRWTVYLPTSGKGKEERKVDGEDVGPTTAFSREREGRNIGSDWNCEISGFILVVSERDMLEDRSFLASRVFSSSCQQETQWACFNLTYRLEVGMGNGKRPSDHDGDEFVRTSSSCGRNVRPRSSRDHHPNDESDSGDSSDSGSLISSIGRDNSINCLIRCSRSDYGSIASLNRSFRSLIRSGELYKLRRLNGVIEHWVYFSCHLLEWEAFDPIQRRWMHLPRMDSNECFMCSDKESLGVGTDLLVFGKDLNSHVTYRYSILTNSWCPGVSMNDPRCLFGSASKGEIAILAGGCDSNGNILNTAELYNSETKTWVTLPNMTKPRKLCSGVFMDKKFYVIGGVGGSEAKVLTCGEEYDLETRKWTEIPNMSPGRSAAARDGDMPAAAEAPPLLAVVNNELYAADHTDMEVRKYDKQRREWFTVGRLPERAVSTNGWGLAFRACGDRLIVIGGPRAMGEGFIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33896632 33900188 - CaPI482276_05g026420.1 Cam05g2642 128046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2642 552 FunFam F-box/kelch-repeat protein SKIP11 249 537 - -
Cam05g2642 552 Gene3D - 255 535 IPR015915 GO:0005515(InterPro)
Cam05g2642 552 MobiDBLite consensus disorder prediction 156 202 - -
Cam05g2642 552 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 149 552 IPR052439 GO:0005634(PANTHER)
Cam05g2642 552 Pfam Kelch motif 333 379 IPR006652 GO:0005515(InterPro)
Cam05g2642 552 Pfam Kelch motif 381 428 IPR006652 GO:0005515(InterPro)
Cam05g2642 552 SMART kelc_smart 301 344 IPR006652 GO:0005515(InterPro)
Cam05g2642 552 SMART kelc_smart 393 438 IPR006652 GO:0005515(InterPro)
Cam05g2642 552 SMART kelc_smart 345 392 IPR006652 GO:0005515(InterPro)
Cam05g2642 552 MobiDBLite consensus disorder prediction 18 38 - -
Cam05g2642 552 MobiDBLite consensus disorder prediction 179 194 - -
Cam05g2642 552 SUPERFAMILY Kelch motif 263 549 IPR015915 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2642 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g2181 Cam-Chr2:34549807 Cam05g2642 Cam-Chr5:33896632 3.20E-83 dispersed
Cam03g0226 Cam-Chr3:3265820 Cam05g2642 Cam-Chr5:33896632 4.70E-85 dispersed
Cam05g1490 Cam-Chr5:18569632 Cam05g2642 Cam-Chr5:33896632 6.80E-55 dispersed
Cam05g2642 Cam-Chr5:33896632 Cam09g0701 Cam-Chr9:6972040 9.90E-14 dispersed
Cam04g1280 Cam-Chr4:26654048 Cam05g2642 Cam-Chr5:33896632 1.80E-126 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003256 3 4 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 0 1 1 1 1 3 2 1 50