Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2651 ATGTCCATTCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTTTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACAGAGGCAGGAAAATGGAACTGTTAGAACGAAGGGAGGCCGGGCGAGTGGCTCTACTTTGGATTTTCCCTTTGCTCTTTCTGCTCCTGATCGTGTTTTCGTCACCGGGGAAGTCCCTCTCGTTAAGCCGGTAGAGAAATTGAAATTGAGGTTTCTCTTTGATTTAGTTTCTCAATCCATCAACATCAGTGAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATTCTCACCTCTATTCAGTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCGTGAGTACAACAGGAGAGGACATGAGAATGTTGTATCGTTTCCTCAGATGCCAGGCCGACAATGTGGACGTGCTCAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCACGTGCTGCGAAGAGAAAGGAATCGGGATTTTCTTTTGAATTCGTTTCTGAATCCATCGAGATCAGCCAAAGTTCTCGGCTCGCCGCGCTAGGTTACGGTTTAGGGCAGAGATCCAGGGGTTTTGTTTACGGCGTGGGTACGGGAAAGGATTTATCGACGTGCAACGAGCTGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGTTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGTGAGTACAACAGGAGAGTACGCGAGATCGTGGAACAGAGTTGGACTGCTGATTAG 1509 46.92 MSILSASPRKPFNRNSEIIAFTDAKFLWGISSNAFRLLLHRQRQENGTVRTKGGRASGSTLDFPFALSAPDRVFVTGEVPLVKPVEKLKLRFLFDLVSQSINISEGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRGHENVVSFPQMPGRQCGRAQEWTKGRCLRLAALPRAAKRKESGFSFEFVSESIEISQSSRLAALGYGLGQRSRGFVYGVGTGKDLSTCNELPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33991350 34004052 - CaPI482276_05g026510.1 Cam05g2651 128055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2651 502 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 354 500 IPR000608 -
Cam05g2651 502 Pfam Ubiquitin-conjugating enzyme 358 494 IPR000608 -
Cam05g2651 502 Pfam Ubiquitin-conjugating enzyme 124 257 IPR000608 -
Cam05g2651 502 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 193 208 IPR023313 -
Cam05g2651 502 SUPERFAMILY UBC-like 348 500 IPR016135 -
Cam05g2651 502 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 352 500 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cam05g2651 502 SUPERFAMILY UBC-like 110 259 IPR016135 -
Cam05g2651 502 Gene3D Ubiquitin Conjugating Enzyme 94 283 IPR016135 -
Cam05g2651 502 CDD UBCc 357 495 IPR000608 -
Cam05g2651 502 SMART ubc_7 357 500 - -
Cam05g2651 502 SMART ubc_7 123 266 - -
Cam05g2651 502 Gene3D Ubiquitin Conjugating Enzyme 349 498 IPR016135 -
Cam05g2651 502 FunFam Ubiquitin-conjugating enzyme E2 2 351 498 - -
Cam05g2651 502 FunFam Ubiquitin-conjugating enzyme E2 2 117 263 - -
Cam05g2651 502 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 427 442 IPR023313 -
Cam05g2651 502 CDD UBCc 123 259 IPR000608 -
Cam05g2651 502 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 120 266 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2651 K10573 - - vvi:100265550 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0822 Cam-Chr2:10481618 Cam05g2651 Cam-Chr5:33991350 2.70E-28 dispersed
Cam03g0167 Cam-Chr3:2557804 Cam05g2651 Cam-Chr5:33991350 2.90E-25 dispersed
Cam05g2290 Cam-Chr5:31001775 Cam05g2651 Cam-Chr5:33991350 4.50E-27 dispersed
Cam05g2651 Cam-Chr5:33991350 Cam09g1031 Cam-Chr9:10711272 1.30E-33 dispersed
Cam10g1820 Cam-Chr10:32314144 Cam05g2651 Cam-Chr5:33991350 3.40E-06 dispersed
Cam05g2651 Cam-Chr5:33991350 Cam05g1029 Cam-Chr5:9285598 1.20E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71