Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2653 ATGGCTATGCACCGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGACGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCCGAAGTAGGCCATTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGATCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCACGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.5 MAMHRLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAADAFEPNPETVTNSFNAEVGHLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34010859 34012417 - CaPI482276_05g026530.1 Cam05g2653 128057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cam05g2653 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cam05g2653 432 Pfam Pectate lyase 170 348 IPR002022 -
Cam05g2653 432 PANTHER PECTATE LYASE 18-RELATED 21 429 IPR045032 GO:0030570(InterPro)
Cam05g2653 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Cam05g2653 432 SMART amb_all 157 354 IPR002022 -
Cam05g2653 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570(InterPro)
Cam05g2653 432 Gene3D - 82 425 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2653 Cam-Chr5:34010859 Cam08g2221 Cam-Chr8:27475673 7.00E-132 dispersed
Cam08g1349 Cam-Chr8:19764636 Cam05g2653 Cam-Chr5:34010859 7.90E-192 transposed
Cam01g1493 Cam-Chr1:28470109 Cam05g2653 Cam-Chr5:34010859 8.60E-178 wgd
Cam10g1195 Cam-Chr10:25357712 Cam05g2653 Cam-Chr5:34010859 1.10E-190 wgd
Cam04g1289 Cam-Chr4:26709969 Cam05g2653 Cam-Chr5:34010859 5.50E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2653 K01728 - csv:101206497 826.239