Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2656 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTAGAGACATATCTTCAACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTTCGGAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCCAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAGCATAACCTTGTCGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGATCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAACGGCTACCACACAGCAGCTGGACCGGTTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAGTCGCGAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 1380 43.48 MEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVANGSHASPYHHQQPHPSPKPNVKA 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34027167 34030614 - CaPI482276_05g026560.1 Cam05g2656 128060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2656 459 Pfam Protein tyrosine and serine/threonine kinase 135 342 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2656 459 Gene3D Transferase(Phosphotransferase) domain 1 217 411 - -
Cam05g2656 459 SMART serkin_6 131 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2656 459 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Cam05g2656 459 SUPERFAMILY Protein kinase-like (PK-like) 107 398 IPR011009 -
Cam05g2656 459 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cam05g2656 459 ProSiteProfiles Protein kinase domain profile. 131 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam05g2656 459 MobiDBLite consensus disorder prediction 69 103 - -
Cam05g2656 459 PANTHER OS01G0588500 PROTEIN-RELATED 97 400 IPR050823 -
Cam05g2656 459 MobiDBLite consensus disorder prediction 425 446 - -
Cam05g2656 459 FunFam Probable serine/threonine-protein kinase PBL8 217 406 - -
Cam05g2656 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam05g2656 459 MobiDBLite consensus disorder prediction 1 30 - -
Cam05g2656 459 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Cam05g2656 459 MobiDBLite consensus disorder prediction 69 107 - -
Cam05g2656 459 MobiDBLite consensus disorder prediction 400 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2656 Cam-Chr5:34027167 Cam06g1201 Cam-Chr6:23179764 5.30E-130 dispersed
Cam05g2656 Cam-Chr5:34027167 Cam08g1343 Cam-Chr8:19722531 1.80E-109 wgd
Cam05g2656 Cam-Chr5:34027167 Cam09g1885 Cam-Chr9:33533321 6.20E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85221 PF07714 PK_Tyr_Ser-Thr 6.30E-45 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2656 - - - 0.0