Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2684 ATGGTAAATGATTTGCGATTGCCAAAGCAGTGTCGATATAAGAGGCAGCGGAGTTACCGACACGTCGGTTGCGGATTGCTGCAGCAATTTAACCTTAAGGACAAAAATAACAGAGTGCGGCGGAGTAGACGTTCTCGTGCTTTATCTTGTCAGAACCCTTTTTATGGTTTTCTTCCTCTTCCTGCAGCCTTTAGTTTTGAGTCGGAAATGAACGGGTCTCGCACGTGCTCGCTGTGTGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGGGGACGTCGGCGGGTTCATGTTGTTCGGAGTTAGGGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGAGCAGCCTCAAAGTCAAGACTCCAACAACGCTGATGCCGGATATGCTTCGGACGACGTCGTTCACCCATCTGACCGTGGCGGCGGCCGGAAGAGAGGGATTCCGTGGACAGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGACTGGAGAGGGATTTCGAGGAATTTTGTGAAGACGCGTACGTCAACTCAGGTTGCGAGTCATGCTCAGAAATACTTTCTCCGACGGAATAATTTCAATCGGAGACGCCGTAGGTCCAGCCTTTTCGATATCACTACTCACACATTCACGAGCTCATCCACGGAAGACGATTTGATATTTTCCGGCCACGAGGTTATGCCGCCACCGCTGCCACCGTCACAGCCGCAAAAAGACACCCTTCCGGGAAATTTCCCGGTGAAAATCTATCCAGCGAAACCACCTCCTGCCGCCGTGGCCGGTGGCGCCGTTGATAGCAACGCCGTAGAGGGTACACTAACACTAAGTTCATCAAATTATCAGGCAAAGACTTGCAGTTCCAGAATTAGTCGTCCAATACCAATGCTTCCTCTATCTCCATACCCAAAGTTGGCTGAATTGAACATTAACGAGAGAACGCCAGAAGACCCTTTACCTCTAACTTTGAAGCTTTCAACTCCACACTCGGAGGAACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTCGCTTGA 1134 51.06 MVNDLRLPKQCRYKRQRSYRHVGCGLLQQFNLKDKNNRVRRSRRSRALSCQNPFYGFLPLPAAFSFESEMNGSRTCSLCGNNGHNSRTCPEGDVGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYEQPQSQDSNNADAGYASDDVVHPSDRGGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSTEDDLIFSGHEVMPPPLPPSQPQKDTLPGNFPVKIYPAKPPPAAVAGGAVDSNAVEGTLTLSSSNYQAKTCSSRISRPIPMLPLSPYPKLAELNINERTPEDPLPLTLKLSTPHSEEQSPAAASQSSGSFQTMSGGGDSIDIVSVA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34245776 34251425 - CaPI482276_05g026840.1 Cam05g2684 128088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2684 377 PANTHER TRANSCRIPTION FACTOR KUA1 73 252 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Cam05g2684 377 MobiDBLite consensus disorder prediction 122 157 - -
Cam05g2684 377 SUPERFAMILY Homeodomain-like 154 209 IPR009057 -
Cam05g2684 377 MobiDBLite consensus disorder prediction 342 369 - -
Cam05g2684 377 FunFam transcription factor MYB1R1 158 209 - -
Cam05g2684 377 MobiDBLite consensus disorder prediction 122 137 - -
Cam05g2684 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Cam05g2684 377 CDD SANT 159 203 IPR001005 -
Cam05g2684 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 155 206 IPR006447 GO:0003677(InterPro)
Cam05g2684 377 SMART sant 156 206 IPR001005 -
Cam05g2684 377 MobiDBLite consensus disorder prediction 330 377 - -
Cam05g2684 377 ProSiteProfiles Zinc finger CCHC-type profile. 76 91 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam05g2684 377 ProSiteProfiles SANT domain profile. 160 208 IPR017884 -
Cam05g2684 377 Gene3D - 158 210 - -
Cam05g2684 377 ProSiteProfiles Myb-like domain profile. 159 204 IPR001005 -
Cam05g2684 377 Pfam Myb-like DNA-binding domain 159 204 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2684 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2684 Cam-Chr5:34245776 Cam10g0244 Cam-Chr10:4236621 9.10E-35 dispersed
Cam09g0017 Cam-Chr9:1117152 Cam05g2684 Cam-Chr5:34245776 9.00E-37 transposed
Cam01g1466 Cam-Chr1:28250548 Cam05g2684 Cam-Chr5:34245776 5.10E-36 wgd
Cam05g2684 Cam-Chr5:34245776 Cam06g1808 Cam-Chr6:29162364 3.00E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52042 PF00249 Myb_DNA-binding 5.00E-10 CL0123 Cam TF