Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2692 ATGGCCAGAAACTCCATCTTCTCCCGCCGCCGGAGGTCGGATCCGTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAATCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCCCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 699 48.93 MARNSIFSRRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34318970 34319952 - CaPI482276_05g026920.1 Cam05g2692 128096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2692 232 MobiDBLite consensus disorder prediction 180 232 - -
Cam05g2692 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Cam05g2692 232 Gene3D - 29 187 - -
Cam05g2692 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 218 IPR045279 GO:0009736(InterPro)
Cam05g2692 232 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cam05g2692 232 MobiDBLite consensus disorder prediction 161 232 - -
Cam05g2692 232 CDD REC_typeA_ARR 31 153 - -
Cam05g2692 232 MobiDBLite consensus disorder prediction 161 179 - -
Cam05g2692 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Cam05g2692 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2692 K14492 - - csv:101209506 341.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2692 Cam-Chr5:34318970 Cam05g2876 Cam-Chr5:35752053 7.00E-38 dispersed
Cam01g0759 Cam-Chr1:8435561 Cam05g2692 Cam-Chr5:34318970 4.30E-39 transposed
Cam10g1583 Cam-Chr10:29562291 Cam05g2692 Cam-Chr5:34318970 4.20E-40 transposed
Cam05g2692 Cam-Chr5:34318970 Cam06g1813 Cam-Chr6:29205961 2.60E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g794 . . . . . Bpe10g00821 . Bma15g00201 Cmo04g01675 . . . . . Sed06g1597 . Cpe01g01415 Bhi07g01668 Tan04g1168 Cmetu10g0771 . . . . Cla05g02508 Cam05g2692 Cec05g2725 Cco05g2760 Clacu05g2695 Cmu05g2549 Cre05g2664 . . Cone8ag0639 Cone12ag0621 Lsi04g00507 Csa05g02375 Chy10g00941 Cme10g00486 Blo06g00861 . Bda07g01573 . Bpe11g01741 . . . . . . Cma04g01600 . Car04g01645 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g2214 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cam11g0360 . 16 343 Response Regulator Gene Family AT4G31920 51.8 2.3e-79 293.5
Cam06g0476 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cam05g0746 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cam08g2214 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cam05g0746 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cam05g1810 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.9e-40 163.3
Cam06g1357 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Cam11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.9 1.2e-84 311.2
Cam05g0746 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cam08g2214 . 295 540 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Cam06g0476 . 92 325 Response Regulator Gene Family AT2G01760 51.4 7.3e-54 208.0
Cam06g1357 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cam08g2214 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cam08g2214 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Cam06g0476 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cam05g0746 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cam05g1810 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cam08g2214 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cam06g1357 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cam11g0360 . 21 269 Response Regulator Gene Family AT4G16110 51.3 4.9e-52 203.0
Cam06g1813 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.5e-54 206.8
Cam05g2692 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cam04g0440 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cam05g2876 . 4 170 Response Regulator Gene Family AT3G48100 53.3 1.7e-39 159.5
Cam10g1583 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cam07g0526 . 25 156 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cam05g2692 . 1 201 Response Regulator Gene Family AT1G59940 60.0 3.0e-55 212.6
Cam06g1813 . 32 177 Response Regulator Gene Family AT1G59940 66.4 1.8e-47 186.8
Cam01g0759 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cam10g1583 . 8 154 Response Regulator Gene Family AT1G59940 57.1 1.0e-39 161.0
Cam05g2876 . 11 156 Response Regulator Gene Family AT1G59940 58.9 5.2e-39 158.7
Cam04g0440 . 11 154 Response Regulator Gene Family AT1G59940 56.3 8.9e-39 157.9
Cam07g0526 . 20 155 Response Regulator Gene Family AT1G59940 60.3 4.4e-38 155.6
Cam05g2692 . 28 185 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cam06g1813 . 32 177 Response Regulator Gene Family AT1G10470 67.8 1.1e-46 183.7
Cam10g1583 . 10 162 Response Regulator Gene Family AT1G10470 55.6 1.0e-39 160.6
Cam01g0759 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cam04g0440 . 17 154 Response Regulator Gene Family AT1G10470 59.4 2.6e-38 156.0
Cam05g2876 . 11 178 Response Regulator Gene Family AT1G10470 51.8 4.4e-38 155.2
Cam07g0526 . 25 155 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cam06g1813 . 16 177 Response Regulator Gene Family AT3G48100 69.3 9.5e-54 206.8
Cam05g2692 . 29 162 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cam04g0440 . 10 156 Response Regulator Gene Family AT3G48100 57.1 2.1e-40 162.5
Cam05g2876 . 4 170 Response Regulator Gene Family AT3G48100 53.3 1.7e-39 159.5
Cam10g1583 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cam07g0526 . 25 156 Response Regulator Gene Family AT3G48100 56.8 8.1e-37 150.6
Cam06g1813 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Cam05g2692 . 25 175 Response Regulator Gene Family AT5G62920 66.9 7.1e-49 190.7
Cam01g0759 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.6e-40 161.8
Cam04g0440 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.0e-39 160.2
Cam10g1583 . 10 156 Response Regulator Gene Family AT5G62920 55.1 6.7e-39 157.5
Cam05g2876 . 11 173 Response Regulator Gene Family AT5G62920 51.8 1.6e-37 152.9
Cam06g1813 . 29 182 Response Regulator Gene Family AT1G19050 71.3 4.5e-52 201.4
Cam05g2692 . 23 185 Response Regulator Gene Family AT1G19050 58.5 5.3e-45 177.9
Cam05g2876 . 8 161 Response Regulator Gene Family AT1G19050 53.9 1.7e-38 156.4
Cam04g0440 . 11 156 Response Regulator Gene Family AT1G19050 54.8 2.8e-38 155.6
Cam10g1583 . 8 156 Response Regulator Gene Family AT1G19050 53.0 8.2e-38 154.1
Cam01g0759 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cam07g0526 . 25 156 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cam04g0440 . 8 264 Response Regulator Gene Family AT2G41310 54.2 2.9e-60 228.8
Cam10g1583 . 1 157 Response Regulator Gene Family AT2G41310 71.3 1.4e-54 209.9
Cam01g0759 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cam08g1013 . 7 158 Response Regulator Gene Family AT2G41310 59.1 9.2e-43 170.6
Cam05g2692 . 25 158 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cam06g1813 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cam07g0526 . 19 156 Response Regulator Gene Family AT2G41310 55.6 5.6e-40 161.4
Cam04g0440 . 8 264 Response Regulator Gene Family AT3G57040 53.1 1.7e-63 239.6
Cam10g1583 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.2e-56 216.9
Cam01g0759 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Cam05g2876 . 4 160 Response Regulator Gene Family AT3G57040 64.2 5.3e-49 191.4
Cam05g2692 . 25 158 Response Regulator Gene Family AT3G57040 59.4 1.9e-43 172.9
Cam08g1013 . 11 174 Response Regulator Gene Family AT3G57040 56.4 1.9e-43 172.9
Cam06g1813 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cam07g0526 . 22 156 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cam06g1813 . 26 182 Response Regulator Gene Family AT1G74890 70.8 5.3e-53 204.5
Cam05g2692 . 25 187 Response Regulator Gene Family AT1G74890 61.2 4.3e-47 184.9
Cam05g2876 . 5 161 Response Regulator Gene Family AT1G74890 56.1 1.1e-39 160.2
Cam04g0440 . 12 172 Response Regulator Gene Family AT1G74890 52.1 2.5e-39 159.1
Cam01g0759 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cam10g1583 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.2e-38 156.0
Cam07g0526 . 25 152 Response Regulator Gene Family AT1G74890 60.2 5.3e-37 151.4
Cam07g0526 . 25 157 Response Regulator Gene Family AT2G40670 70.1 2.0e-47 185.7
Cam05g2692 . 26 159 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Cam10g1583 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.0e-40 160.6
Cam06g1813 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Cam04g0440 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.3e-37 150.6
Cam07g0526 . 1 157 Response Regulator Gene Family AT3G56380 64.6 2.9e-48 188.3
Cam05g2692 . 23 159 Response Regulator Gene Family AT3G56380 52.9 2.9e-40 161.8
Cam06g1813 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.0e-40 161.0
Cam10g1583 . 6 156 Response Regulator Gene Family AT3G56380 52.6 9.5e-39 156.8
Cam01g0759 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cam05g2876 . 3 151 Response Regulator Gene Family AT3G56380 54.7 8.9e-37 150.2
Cam08g2214 . 336 540 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cam06g0476 . 30 255 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cam05g0746 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Cam05g1810 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cam08g2214 . 294 519 Response Regulator Gene Family AT4G16110 54.5 9.3e-59 225.3
Cam06g1357 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.7e-57 218.8
Cam11g0360 . 21 269 Response Regulator Gene Family AT4G16110 51.3 4.9e-52 203.0
Cam11g0360 . 16 343 Response Regulator Gene Family AT4G31920 51.8 2.3e-79 293.5
Cam06g0476 . 29 284 Response Regulator Gene Family AT4G31920 55.5 1.0e-71 268.1
Cam05g0746 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.7e-70 261.5
Cam08g2214 . 295 543 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cam05g0746 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cam05g1810 . 93 255 Response Regulator Gene Family AT1G67710 53.8 2.9e-40 163.3
Cam06g1357 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.1e-102 368.6
Cam11g0360 . 18 362 Response Regulator Gene Family AT2G25180 54.9 1.2e-84 311.2
Cam05g0746 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cam08g2214 . 295 540 Response Regulator Gene Family AT2G25180 55.6 8.9e-69 258.5
Cam06g0476 . 92 325 Response Regulator Gene Family AT2G01760 51.4 7.3e-54 208.0
Cam06g1357 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.1e-49 191.4
Cam08g2214 . 356 543 Response Regulator Gene Family AT2G01760 51.0 3.5e-48 189.1
Cam08g2214 . 293 542 Response Regulator Gene Family AT5G58080 50.6 6.6e-62 235.7
Cam04g1240 . 567 1112 Response Regulator Gene Family AT5G61380 50.3 4.5e-140 495.4
Cam04g0853 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cam01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cam04g0853 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.4e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005399 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52044 PF00072 Response_reg 1.20E-21 CL0304 Cam TR