Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2700 ATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAAGAAGATTCTTCCGGCGTCTTCTCCGGCGAGACGCCGGGGTGTTCTTCCGACCTTGATTCTCCGGCTTGCGTCGAGGAATCTATTTCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCCGCTAGATTAGACTCTATTGCATGGATTCTTAAGGTTCAAGCGTATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTAGTTCACGCCGTTTGCCGCAAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCACTCGCTGCTAAAATGGAGGAACCTCTTGTTCCCGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACGATATGCAGGATGGAATTATTGGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCCTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGATTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCGTTGCTTTGTGCGGCAAATGAAGTCCCGAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGGAAGAGATTGTGCTTGATAATAGCCGGAGAAACTCCCCCAAAATCATACCTCAGTTTAGAGTGACAGTTCGCACTAGAATGAGATCCAGCGACTTATCTTCCACCTACTCTTCCTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGAGAAAGATTCCCAATGGGAGGGGAAACTAAAGGGAAAGAGGGGTTTGTTTGATTTTGAGGGAAATGGCAGAGCGTTGAATAAGTGGAGTCCATATGGAGTGTGA 1083 46.26 MSVSISNCFSNLLCQEDSSGVFSGETPGCSSDLDSPACVEESISVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKVQAYYGFQPLTAYLSVNYLDRFLSSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMEEIVLDNSRRNSPKIIPQFRVTVRTRMRSSDLSSTYSSSSSSSSSPNKRRKLNQTHLWVDDEKDSQWEGKLKGKRGLFDFEGNGRALNKWSPYGV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34393106 34395959 + CaPI482276_05g027000.1 Cam05g2700 128104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2700 360 Gene3D - 56 173 - -
Cam05g2700 360 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Cam05g2700 360 MobiDBLite consensus disorder prediction 295 320 - -
Cam05g2700 360 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cam05g2700 360 SUPERFAMILY Cyclin-like 157 275 IPR036915 -
Cam05g2700 360 PANTHER CYCLINS 36 268 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam05g2700 360 Gene3D - 46 236 - -
Cam05g2700 360 Pfam Cyclin, N-terminal domain 43 173 IPR006671 -
Cam05g2700 360 ProSitePatterns Cyclins signature. 73 104 IPR048258 -
Cam05g2700 360 SMART Cyclin_C_2 175 311 IPR004367 -
Cam05g2700 360 MobiDBLite consensus disorder prediction 295 317 - -
Cam05g2700 360 Pfam Cyclin, C-terminal domain 175 285 IPR004367 -
Cam05g2700 360 SMART cyclin_7 78 166 IPR013763 -
Cam05g2700 360 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Cam05g2700 360 FunFam D2/4-type cyclin 56 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g0922 Cam-Chr4:23339781 Cam05g2700 Cam-Chr5:34393106 2.10E-23 dispersed
Cam05g2257 Cam-Chr5:30755476 Cam05g2700 Cam-Chr5:34393106 1.10E-37 dispersed
Cam05g2700 Cam-Chr5:34393106 Cam09g2102 Cam-Chr9:35595801 3.10E-125 dispersed
Cam05g2700 Cam-Chr5:34393106 Cam08g1609 Cam-Chr8:22257233 1.10E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2700 K18810 - csv:101209417 590.112