Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2728 ATGATTGTGCTGCTATTCATCAAACAAAGCAACATACTGGCAGACGGTCATGCATCTAACTCAGTAGAAGTACGTCATGGATCTTCTAAGCCGCCATGGGATGCTTCACCTCGAGTTATGGATCTTCTCCAATCATACACAGATCAAAGCGACGAAGATGGAAGCCCTAAACAGCTTTCATCTTCACCAGAAGCCTCTCCGCCTCGACTTCTCCCCTCCAAAACCTCAGCGCCTAAGGTTGATGATACAATGTTAGCCCTCACGGTTGCGAACGCCAATCAGACCCTCTCGAAGCCGATAGACCCAACTCAACATCTCGTTGCCTTCAACCCCACTTACGACCAACTCTGGGCTCCCATTTACGGCCCATCTCATCCCTATGCCAAGGATGGCATTGCACAGGGCATGCGAAACCACAAGCTAGGGTTCGTGGAGAACGCGTCCATTGAACCATTTGTCTTCGATGAGCAGTACAACACTTTCCATAAATATGGATATGCTGCTGACCCATCAGCTTCTGCTGGAAACAATTACATTGGGGACATGGAGGCTTTGCAGAAGAATGATGCCATTTCCGTGTATAACATTCCACAGCACGAGCAAAAGAAGCGGAAGATTGAGAAAAAGAAAGAAATGAGTGAGAATGAGGATGTAGAAGAAGACTTGAACCCGGATGAAGTTGATAACCCAGCCACTGATGTGTGGTTGATGAAGAATAGGAAGAGTCCATGGTCTGGTAAGAAGGAAGGCCTGCAAACTGAGCTAACTGAGGAGCAGAAGAAATATGCAGAAGAGTATGCAAAGAAGAAAGGTGAAGAGAAAGGTGGTGAGAAGGGAGAAGTTACAGCGGATAAGAGTACTTTTCATGGTAAAGAGGAGAGGGACTACCAAGGTAGATCTTGGATTGCACCCCCGAAGGATGCCAAGGCCACAAATGATCATTGTTATATACCAAAAAGATTGGTGCATACATGGAGCGGGCACACGAAGGGTGTATCTGCTATTAGATTCTTCCCTAAACATGGCCATTTGATTCTTTCAGCTGGTATGGATACCAAGGTGAAGATATGGGATGTGTTCAATTCTGGTAAATGTATGAGAACCTACATGGGTCACTCTCAGGCAGTTCGGGATATTTCATTTTGTAATGATGGATCTAAGTTTTTGACAGCCGGATATGATAAAAAGATTAAGTATTGGGATACAGAAACAGGGCAAGTGATATCAACCTTCTCCACCGGGAAAATTCCTTATGTAGTTAAGCTTAATCCTGATGATGATAAGCAGAATATTTTGCTGGCAGGAATGAGTGATAAGAAAATCGTTCAGTGGGATATGAACACAGGACAGATTACACAAGAGTATGATCAACATTTAGGAGCAGTGAATACCATTACATTTGTAGACAATAATAGGAGGTTTGTTACATCAAGTGATGACAAGTCTCTCCGTGTTTGGGAATTTGGAATTCCTGTTGTCATTAAGTATATTAGTGAGCCTCACATGCATTCCATGCCCTCCATTTCTGTACATCCCAATACGAATTGGCTTGCAGCACAGAGTTTAGACAATCAGATTCTTATTTATAGCACTAGGGAGAGATTTCAGCTAAACAAGAAAAAGAGGTTTGCTGGGCACATTGTGGCAGGATATGCGTGTCAGGTTAATTTTTCTCCAGATGGACGTTTTGTTATGTCGGGTGATGGTGAGGGTAAATGCTGGTTTTGGGATTGGAAAACCTGCAAGGTATTCAGAACTCTCAAGTGTCACGAAGGTGTTTGCATTGGGTGTGAGTGGCATCCATTGGAACAAAGTAAAGTAGCAACGTGCGGCTGGGATGGACTGATAAAGTATTGGGACTAG 1863 43.85 MIVLLFIKQSNILADGHASNSVEVRHGSSKPPWDASPRVMDLLQSYTDQSDEDGSPKQLSSSPEASPPRLLPSKTSAPKVDDTMLALTVANANQTLSKPIDPTQHLVAFNPTYDQLWAPIYGPSHPYAKDGIAQGMRNHKLGFVENASIEPFVFDEQYNTFHKYGYAADPSASAGNNYIGDMEALQKNDAISVYNIPQHEQKKRKIEKKKEMSENEDVEEDLNPDEVDNPATDVWLMKNRKSPWSGKKEGLQTELTEEQKKYAEEYAKKKGEEKGGEKGEVTADKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34598313 34602713 - CaPI482276_05g027280.1 Cam05g2728 128132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 359 - -
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 620 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 620 - -
Cam05g2728 620 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Cam05g2728 620 SUPERFAMILY WD40 repeat-like 316 620 IPR036322 GO:0005515(InterPro)
Cam05g2728 620 MobiDBLite consensus disorder prediction 47 69 - -
Cam05g2728 620 PANTHER PRE-MRNA-PROCESSING FACTOR 17 40 620 IPR032847 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0003729(PANTHER)|GO:0071013(PANTHER)|GO:0071013(InterPro)
Cam05g2728 620 SMART WD40_4 536 577 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 362 401 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 318 358 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 491 530 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 448 487 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 404 445 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 SMART WD40_4 580 620 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 FunFam Pre-mRNA-processing factor 17, putative 305 620 - -
Cam05g2728 620 Pfam WD domain, G-beta repeat 450 486 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 Pfam WD domain, G-beta repeat 363 401 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 Pfam WD domain, G-beta repeat 541 577 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 Pfam WD domain, G-beta repeat 320 358 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 CDD WD40 321 620 - -
Cam05g2728 620 Coils Coil 196 216 - -
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 369 406 - -
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 410 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 455 487 - -
Cam05g2728 620 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Cam05g2728 620 PRINTS G protein beta WD-40 repeat signature 474 488 IPR020472 -
Cam05g2728 620 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 455 487 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 MobiDBLite consensus disorder prediction 268 300 - -
Cam05g2728 620 MobiDBLite consensus disorder prediction 268 305 - -
Cam05g2728 620 MobiDBLite consensus disorder prediction 47 77 - -
Cam05g2728 620 Gene3D - 305 620 IPR015943 GO:0005515(InterPro)
Cam05g2728 620 MobiDBLite consensus disorder prediction 199 216 - -
Cam05g2728 620 MobiDBLite consensus disorder prediction 199 230 - -
Cam05g2728 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 359 IPR001680 GO:0005515(InterPro)
Cam05g2728 620 Coils Coil 248 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2728 K12816 - - csv:101214854 1164.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42