Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2741 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATACAAGAAAAAGAAGACACAGAGAACTGTAATCAGATTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA 570 42.46 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFFDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTENCNQIEVHKDGKCFPRHSFLT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34687127 34688521 - CaPI482276_05g027410.1 Cam05g2741 128145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2741 189 PANTHER PROTEIN YABBY 6-RELATED 8 171 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Cam05g2741 189 SUPERFAMILY HMG-box 104 160 IPR036910 -
Cam05g2741 189 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Cam05g2741 189 CDD HMG-box_SF 119 165 - -
Cam05g2741 189 Gene3D High mobility group box domain 110 175 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2741 Cam-Chr5:34687127 Cam06g1215 Cam-Chr6:23391851 4.70E-32 dispersed
Cam05g2741 Cam-Chr5:34687127 Cam08g2260 Cam-Chr8:27700522 2.90E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52048 PF04690 YABBY 1.40E-57 CL0114 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2741 K25796 - csv:101211641 331.643