Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2788 ATGTTCAATCAGTCAAAACAACCAGAAGTAGAGGTTGGTAGACCTTCTTGGCCACCAACCAAATTCCGCCACGTGTACGATGGTCAAAAGGAAAACCAGAAGAGTCGGTTTGGCTTCCTCTTTTCAAGGTTCCAAAACTCTGCTACTGCTCTTTTCAAACACCCTTCTATTCAAATTCGGGGTTTCGATTCTTCAACGAATTCAACAATTCTAGAGAGAAATAAGAGGGAGATTATTCTGGGGGTGGTGTTGGTTGGGAAGGAGGAGATGGTCAAGGGTTTTAGGAATAAGCTTCAAATGGATACGAGTCAAAGAGTGCCTAACAGCAATAAAGCTCGATCATGTCTGCCGCCGCTGCAGCCGCTTTCAATTAGCCGCCGGAATGTTGAGGAGTGGCCACGAGCGGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAGCTTGTTAATAAGTCGTCTCAGAGTTCTGAGTGTGAACAACCTGTGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTCTTTGATAAGGAATGCTCGAAGATTCTTGAACATGTGTATTTAGGGAGTGATTCTGTGGCTAAGAATCGACAAGTTCTGAGACAGAATGGGATCACTCATGTGCTGAATTGTGTTGGCTTTGTCTGTCCTGAGTACTTCAAAGGTGAATTTGTGTACAAAACTCTTTGGTTGCAAGATAGTCCCTCTGAGGATATTACTAGTATCCTCTACAATGTGTTTGATTACTTTGAAGATGTTCATGAGCAAGGCGGTCGGGTTTTCGTGCATTGTTGCCAAGGAGTGTCTCGGTCGACCTCTCTGGTGATTGCGTACCTCATGTGGAAGGAAGGACGAAGTTTTCACGATGCTTTTCAATATGTAAAGGCTGCTCGAGGGGTAGCTAATCCAAACTTGGGTTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGAGTACATGCAGTGCCTGCTAGCCCGAATTCGATTTTGAGGATGTATAGGATGGCTCCTCATTCGTCGTATGATCCGCTTCATCTTGTACCTAAGTTGTTGAACACTCCGAGTGTTCAAGGACTTGATTCTCGTGGTGCATTTGTTGTGCACGTTCCTTCAGCTATCTATGTCTGGAAAGGGGAGACATGCGGCTCTGTGATGTTGAATACGGCTAATGCAGCAGCGTCGCAGGTCATTCGATATGAAAAAGCAAAAGGCCCCATCCATAGCATCAAAGAAGGTGAAGAACCATTTGAATTCTGGGATGCACTTATGATTGGCCAAAATTTGACTGATAGTTCTGAAGAAGGGAAAGTTCAAAGGCTTGGTAATTTGTCTACCACAGAAGATCACATCTCGAAAATAACAAGTGTGAAGGTGGGTGAACGGAGAGTTGAGGAGTATAATCCAGATTTTGAAATTTTTTACAGGGCAATTTCAGGTGGGGTTGTTCCACCTTTAGATCGATTCAATACTGAATCAGAGAATTATCTTCCGACTAGAGAAAATGGGTGGGACTCGACCAAAAGGAAGTTTGAAAATGAAACTGCAAAAGATATTGCCACATCTTTGTCAGAATTGGACTGTGATACTAGATCACCATTTGATGATGATATGGCTATGACTGCAAATATTGATGAAGATGCAGAAGTACCTGTTTCTTCAATTGATCTTGCATCTCCACCAATTTCACCCACAGCCTATTTGTGTGGTTCACCTGAATCTTTTGACTGTTTTCCAAATAGTAGCCTGGATCAGGAAATAGAAAATTCTAACGAGGAAAGCTCGATCCCAGGCGATCCTTTGTCGTTACCAATTCATCCTCTGGGGTCACCAGATTCATTTTCCTGTTTTCAAGGAGGTACTAGTCCAAAAGTTGGCACAAAATCCCCTTCACTCTCTCCTTCTACATCTGATAATTCTAGTTCTTTTACCTTTTCGCCGTCATCGTCTAATTGGTCTGACTTATCATATATGTCTTCTCGGCAACCTTCACCATCTGACATGGACTCATTGCATCCGGCTGTCCAAAATTCTTCCATCATTGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATATTTGTAGAGTCTTTTTCCTCTTATCATCCTACAATAAAGGTGGAAAACACCCATTTGACATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCCAGGATGTTGCTGCCCTCCATTGAAGAAGCCTGCAAGGTTCAGAAGAAAATAGTTCGATCATCGTCATTTTCTTTACCCGATTTAGACGATGATCAGTTGGAGATATCTGGGTACAGACATTCCAAAGATAAAAACAGTAGTAAAGATATGAATTTGGATATTGATAGATTTGGGGCTTGCACTGAATTAGAATGCAAATTTGAGGAAGGAAAAACACTGGTCTTTTACCAGTGGCCTTCAATGAGTAAAGCGACGATCAATCAACTTGGAAGTCTCGATTCTAGATCAGTGTATATGTCGTTCGATCCAGATCTAAATTTGGATTCAAACGGCGGTAACAAACTATTTATCTGGTTGGGGCGTGAAGTTTTGCATGAGAATGATGACAGTCAACTGATGAATGACTACAGTGGTTGTCTCCACTGGGAGATGATCGGACATATTTTCATTAATAACAAGGGAATTCCTACAGATACCCAAATACAGATAATAAGAGAAGGGGAGGAGCCCGAGGAGTTCCTTGCACTTCTAAGCCGTTCATTACCTCAACAAGCGGAAGATGTTTGA 2769 42.54 MFNQSKQPEVEVGRPSWPPTKFRHVYDGQKENQKSRFGFLFSRFQNSATALFKHPSIQIRGFDSSTNSTILERNKREIILGVVLVGKEEMVKGFRNKLQMDTSQRVPNSNKARSCLPPLQPLSISRRNVEEWPRAGSDDLGVWPNPETPRELVNKSSQSSECEQPVREFQFKKDKLAFFDKECSKILEHVYLGSDSVAKNRQVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLQDSPSEDITSILYNVFDYFEDVHEQGGRVFVHCCQGVSRSTSLVIAYLMWKEGRSFHDAFQYVKAARGVANPNLGFACQLLQCQKRVHAVPASPNSILRMYRMAPHSSYDPLHLVPKLLNTPSVQGLDSRGAFVVHVPSAIYVWKGETCGSVMLNTANAAASQVIRYEKAKGPIHSIKEGEEPFEFWDALMIGQNLTDSSEEGKVQRLGNLSTTEDHISKITSVKVGERRVEEYNPDFEIFYRAISGGVVPPLDRFNTESENYLPTRENGWDSTKRKFENETAKDIATSLSELDCDTRSPFDDDMAMTANIDEDAEVPVSSIDLASPPISPTAYLCGSPESFDCFPNSSLDQEIENSNEESSIPGDPLSLPIHPLGSPDSFSCFQGGTSPKVGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSLHPAVQNSSIIDNFCLHHKETHPIFVESFSSYHPTIKVENTHLTSRGASPSIAERRGSHPPPRMLLPSIEEACKVQKKIVRSSSFSLPDLDDDQLEISGYRHSKDKNSSKDMNLDIDRFGACTELECKFEEGKTLVFYQWPSMSKATINQLGSLDSRSVYMSFDPDLNLDSNGGNKLFIWLGREVLHENDDSQLMNDYSGCLHWEMIGHIFINNKGIPTDTQIQIIREGEEPEEFLALLSRSLPQQAEDV 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35057419 35061902 - CaPI482276_05g027880.1 Cam05g2788 128192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2788 922 MobiDBLite consensus disorder prediction 581 599 - -
Cam05g2788 922 SMART dsp_5 182 321 IPR020422 GO:0006470(InterPro)
Cam05g2788 922 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 241 302 IPR000387 GO:0016311(InterPro)
Cam05g2788 922 SUPERFAMILY Actin depolymerizing proteins 328 425 - -
Cam05g2788 922 Pfam Dual specificity phosphatase, catalytic domain 190 320 IPR000340 GO:0016311(InterPro)
Cam05g2788 922 MobiDBLite consensus disorder prediction 581 606 - -
Cam05g2788 922 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 176 323 IPR029021 -
Cam05g2788 922 CDD DSP 183 317 - -
Cam05g2788 922 PANTHER MKPA PROTEIN 98 911 - -
Cam05g2788 922 MobiDBLite consensus disorder prediction 618 675 - -
Cam05g2788 922 Gene3D Protein tyrosine phosphatase superfamily 151 324 IPR029021 -
Cam05g2788 922 MobiDBLite consensus disorder prediction 137 157 - -
Cam05g2788 922 Gene3D Severin 334 432 IPR029006 -
Cam05g2788 922 ProSitePatterns Tyrosine specific protein phosphatases active site. 266 276 IPR016130 GO:0016311(InterPro)
Cam05g2788 922 ProSiteProfiles Dual specificity protein phosphatase domain profile. 182 324 IPR020422 GO:0006470(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2788 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2788 Cam-Chr5:35057419 Cam07g0301 Cam-Chr7:4050842 1.40E-153 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37