Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2840 ATGTCTCGTGTATACGTTGGGAATTTGGATCCAAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTGTTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGACTTTGATGACCCCAGAGATGCACGGGATGCAATCCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCCCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGGGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGCGGCGGCGGCGGTGGCGGTGCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCCTGTCACCTCGTGGACGTAGCTTTAGCAGATCACCTCCATACCGTGGTAGAGAGGAACTACCTTATGCCAATGGAAATGGCTGCTTGGACTTCGTAACGGACCTTTTTAAAATCGGGCGACGCCCTCAGCCTCTACTTTTGAGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCCCAGCTCTGGGATCTTCAATTTGAAACGTTGCATGAGGAACGTCATCAAATGCTTCTGGCAGGTTTTGCACCTCTAGCAGAGATCATTTGGTTCGTTTCTCATCTGCTTGAAAGTTCCTATTTCTCAAAGAGACATAAGTTCCACAAGTTCCTGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGGAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAAGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGACTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCAATCGCCAAAGATGTCGTCTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTCCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCACCAATTACTCTCAAGCAAAGCAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTACAAAAGCCTGATGAGCCAGACTTTTCTGAAGAACCAGACGATTAA 3000 45.07 MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYANGNGCLDFVTDLFKIGRRPQPLLLSVVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAQLWDLQFETLHEERHQMLLAGFAPLAEIIWFVSHLLESSYFSKRHKFHKFLFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESEKILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRTAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSRFLQKYFYCLWWGLQNLSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRTNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLQKPDEPDFSEEPDD 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35468749 35479882 - CaPI482276_05g028400.1 Cam05g2840 128244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2840 999 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723(InterPro)
Cam05g2840 999 Pfam Cyclic nucleotide-binding domain 783 871 IPR000595 -
Cam05g2840 999 MobiDBLite consensus disorder prediction 979 999 - -
Cam05g2840 999 Pfam RNA recognition motif 4 61 IPR000504 GO:0003723(InterPro)
Cam05g2840 999 CDD CAP_ED 759 890 IPR000595 -
Cam05g2840 999 SMART c2hcfinal6 92 108 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam05g2840 999 MobiDBLite consensus disorder prediction 107 168 - -
Cam05g2840 999 MobiDBLite consensus disorder prediction 66 88 - -
Cam05g2840 999 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Cam05g2840 999 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676(InterPro)
Cam05g2840 999 Gene3D Jelly Rolls 757 877 IPR014710 -
Cam05g2840 999 Gene3D Helix hairpin bin 687 750 - -
Cam05g2840 999 ProSiteProfiles Zinc finger CCHC-type profile. 92 107 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam05g2840 999 Gene3D - 72 132 - -
Cam05g2840 999 Gene3D - 1 71 IPR012677 -
Cam05g2840 999 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam05g2840 999 MobiDBLite consensus disorder prediction 926 953 - -
Cam05g2840 999 Gene3D - 377 685 - -
Cam05g2840 999 CDD RRM_SRSF3_like 3 71 - -
Cam05g2840 999 FunFam Serine/arginine-rich splicing factor RSZ22A 89 153 - -
Cam05g2840 999 FunFam Cyclic nucleotide-gated ion channel 1 757 875 - -
Cam05g2840 999 FunFam Cyclic nucleotide-gated ion channel 1 686 750 - -
Cam05g2840 999 Pfam Ion transport protein 361 686 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam05g2840 999 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 339 977 - -
Cam05g2840 999 SUPERFAMILY cAMP-binding domain-like 689 881 IPR018490 -
Cam05g2840 999 SMART cnmp_10 759 890 IPR000595 -
Cam05g2840 999 SUPERFAMILY Voltage-gated potassium channels 358 681 - -
Cam05g2840 999 SUPERFAMILY Retrovirus zinc finger-like domains 85 108 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cam05g2840 999 ProSiteProfiles cAMP/cGMP binding motif profile. 759 842 IPR000595 -
Cam05g2840 999 SMART rrm1_1 3 69 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2718 Cam-Chr5:34530254 Cam05g2840 Cam-Chr5:35468749 4.70E-23 dispersed
Cam05g2840 Cam-Chr5:35468749 Cam06g1430 Cam-Chr6:25765846 3.30E-278 dispersed
Cam05g2840 Cam-Chr5:35468749 Cam10g1241 Cam-Chr10:25824489 1.70E-245 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2840 K05391 - csv:101211072 1272.3