Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g2840 | ATGTCTCGTGTATACGTTGGGAATTTGGATCCAAGGGTCTCTGAGCGCGAGCTTGAAGATGAATTTCGTGTGTTTGGAGTTATTCGAAGTGTATGGGTTGCACGAAGACCCCCTGGTTATGCCTTTATAGACTTTGATGACCCCAGAGATGCACGGGATGCAATCCATGAATTAGATGGGAAGAATGGCTGGAGAGTTGAACTTTCCCACAATTCTAGAGGTGGTGGAGGTGGCCGTGGAGGGGGTCGTGGTCGTTCTGGTGGTTCTGATTTGAAATGCTATGAGTGTGGTGAGCCTGGGCATTTTGCTCGTGAGTGCCGTTTACGTGGCGGCGGCGGCGGTGGCGGTGCTGGAAGAAGACGTAGCCGCAGTCCTCGATACCGCCGGAGTCCAAGTTATGGTCGCAGGAGTTACAGTCCCCGTGGAAGATCTCCAAGACGCCGCAGCCTGTCACCTCGTGGACGTAGCTTTAGCAGATCACCTCCATACCGTGGTAGAGAGGAACTACCTTATGCCAATGGAAATGGCTGCTTGGACTTCGTAACGGACCTTTTTAAAATCGGGCGACGCCCTCAGCCTCTACTTTTGAGTGTCGTCTCGTTCTGCTTCACTGCTTTTCTGCTTCTAGTCGTCTGCTTCTGCTTCACTGCTTTTCTGCTTCTGCCCTATCCTGGGATTTCGTTCTACACTGCCCAGCTCTGGGATCTTCAATTTGAAACGTTGCATGAGGAACGTCATCAAATGCTTCTGGCAGGTTTTGCACCTCTAGCAGAGATCATTTGGTTCGTTTCTCATCTGCTTGAAAGTTCCTATTTCTCAAAGAGACATAAGTTCCACAAGTTCCTGTTTTACTCCAATGAGAAGAAGAATCTTGAGCTTCCATGGGAGAAAAACGATGGGAAGAAGAGGAGCATTGAGTTCTCATTACCAGTTTTCAAAATGGGGAAGAAATTAGAGAATGAAAGTAAAATTATGAACTCGGATTCTTCAGGGAGGTCCAAGGGCTTTTTGGAGAGTAATGGGTTACAAGAAGAGAAGAACAAGAGGATTCTTAATCCAGAAAGTGAAAAGATTCTGAGATGGAATAGAGTTTTTCTCTTCTCTTGTTTGACAGCTCTTTTCGTTGACCCATTGTTCTTCTACCTTCCTTCAGTGATTCATCATAAGAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTTTTCTATCTGTTGCATATGATTTTGAAGTTCCGGACTGCTTATGTATCACCAACTTCAAGAGTTTTTGGTAAAGGTGAACTCGTTACTGATCCAAAGAAGATTGCCAAACGCTATTTGAAGTCAGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCGCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAACAATACTCTTGTGTTAATTGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAGACTGCTTGGGCTGGGGCTGCATACAACCTTGTATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTGCTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTCCGCCTGCAGGAGCGAATTCAGTCCTATGAAATGCCGTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGATGTTGTTTTCAATTACGGGATATTTGCGAATGCAATCGCCAAAGATGTCGTCTCCTCCAGGTTCCTTCAGAAGTATTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGGGTTTGTCGACAAGCATCTACATGGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCACATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTCAAGCGTCGAGACACGGAGGAATGGATGAAACATCGACAGCTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATATAAGTGGCTTGCAACACGAGGAGTTGACGAAGAGTCAATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGCCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTTTTCGCACAAATGGATGATCAACTACTTGACGCAATTTGCGAGCGACTTGCTTCCTCTCTATGTACACAACGTACCTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATCCGAGGGATGCTCGAGAGTTCCACAACGGATGGAGGACGGTCAGGTTTTTTCAATTCGATAACCTTAAGACCTGGCGATTTTTGTGGCGAAGAGCTTCTGGCTTGGGCATTGCTACCAAAATCATCAATCAGCTTGCCATCTTCTACTAGAACAGTTAAAGCAATCACTGAAGTGGAAGCCTTTGCTCTACGTGCTGAGGATCTCAAATTCGTCGCTAACCAGTTTCGACGTCTTCATAGCAAGAAGCTCCAGCACACATTCCGGTTTTACTCTTATCACTGGAGAACCTGGGCAGCCTGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGGCGAATCATAGCAAAGTCGCTCAGCTTGCAGGAGTCTTTCTCGATGACTCCTGAGAAGCCAGTGGCGGATGAAGCCGAACAAGAAGAGGAAGAGCATAATACTCCACGCACCAATTACTCTCAAGCAAAGCAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCTCAAAAGCTTAAGGATGTCAACTTATCCAAGCTACAAAAGCCTGATGAGCCAGACTTTTCTGAAGAACCAGACGATTAA | 3000 | 45.07 | MSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDARDAIHELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGGGGGGAGRRRSRSPRYRRSPSYGRRSYSPRGRSPRRRSLSPRGRSFSRSPPYRGREELPYANGNGCLDFVTDLFKIGRRPQPLLLSVVSFCFTAFLLLVVCFCFTAFLLLPYPGISFYTAQLWDLQFETLHEERHQMLLAGFAPLAEIIWFVSHLLESSYFSKRHKFHKFLFYSNEKKNLELPWEKNDGKKRSIEFSLPVFKMGKKLENESKIMNSDSSGRSKGFLESNGLQEEKNKRILNPESEKILRWNRVFLFSCLTALFVDPLFFYLPSVIHHKRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRTAYVSPTSRVFGKGELVTDPKKIAKRYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLVLYMLASHILGAAWYLLSVERHAMCWKSACRSEFSPMKCRLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFANAIAKDVVSSRFLQKYFYCLWWGLQNLSSYGQGLSTSIYMGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRSGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVKAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRIIAKSLSLQESFSMTPEKPVADEAEQEEEEHNTPRTNYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLQKPDEPDFSEEPDD | 999 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35468749 | 35479882 | - | CaPI482276_05g028400.1 | Cam05g2840 | 128244 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g2840 | 999 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723(InterPro) | |
Cam05g2840 | 999 | Pfam | Cyclic nucleotide-binding domain | 783 | 871 | IPR000595 | - | |
Cam05g2840 | 999 | MobiDBLite | consensus disorder prediction | 979 | 999 | - | - | |
Cam05g2840 | 999 | Pfam | RNA recognition motif | 4 | 61 | IPR000504 | GO:0003723(InterPro) | |
Cam05g2840 | 999 | CDD | CAP_ED | 759 | 890 | IPR000595 | - | |
Cam05g2840 | 999 | SMART | c2hcfinal6 | 92 | 108 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cam05g2840 | 999 | MobiDBLite | consensus disorder prediction | 107 | 168 | - | - | |
Cam05g2840 | 999 | MobiDBLite | consensus disorder prediction | 66 | 88 | - | - | |
Cam05g2840 | 999 | FunFam | Serine/arginine-rich splicing factor 7 | 2 | 69 | - | - | |
Cam05g2840 | 999 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 87 | IPR035979 | GO:0003676(InterPro) | |
Cam05g2840 | 999 | Gene3D | Jelly Rolls | 757 | 877 | IPR014710 | - | |
Cam05g2840 | 999 | Gene3D | Helix hairpin bin | 687 | 750 | - | - | |
Cam05g2840 | 999 | ProSiteProfiles | Zinc finger CCHC-type profile. | 92 | 107 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cam05g2840 | 999 | Gene3D | - | 72 | 132 | - | - | |
Cam05g2840 | 999 | Gene3D | - | 1 | 71 | IPR012677 | - | |
Cam05g2840 | 999 | Pfam | Zinc knuckle | 92 | 107 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cam05g2840 | 999 | MobiDBLite | consensus disorder prediction | 926 | 953 | - | - | |
Cam05g2840 | 999 | Gene3D | - | 377 | 685 | - | - | |
Cam05g2840 | 999 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Cam05g2840 | 999 | FunFam | Serine/arginine-rich splicing factor RSZ22A | 89 | 153 | - | - | |
Cam05g2840 | 999 | FunFam | Cyclic nucleotide-gated ion channel 1 | 757 | 875 | - | - | |
Cam05g2840 | 999 | FunFam | Cyclic nucleotide-gated ion channel 1 | 686 | 750 | - | - | |
Cam05g2840 | 999 | Pfam | Ion transport protein | 361 | 686 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cam05g2840 | 999 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 339 | 977 | - | - | |
Cam05g2840 | 999 | SUPERFAMILY | cAMP-binding domain-like | 689 | 881 | IPR018490 | - | |
Cam05g2840 | 999 | SMART | cnmp_10 | 759 | 890 | IPR000595 | - | |
Cam05g2840 | 999 | SUPERFAMILY | Voltage-gated potassium channels | 358 | 681 | - | - | |
Cam05g2840 | 999 | SUPERFAMILY | Retrovirus zinc finger-like domains | 85 | 108 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cam05g2840 | 999 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 759 | 842 | IPR000595 | - | |
Cam05g2840 | 999 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam05g2718 | Cam-Chr5:34530254 | Cam05g2840 | Cam-Chr5:35468749 | 4.70E-23 | dispersed | |
Cam05g2840 | Cam-Chr5:35468749 | Cam06g1430 | Cam-Chr6:25765846 | 3.30E-278 | dispersed | |
Cam05g2840 | Cam-Chr5:35468749 | Cam10g1241 | Cam-Chr10:25824489 | 1.70E-245 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g2840 | K05391 | - | csv:101211072 | 1272.3 |