Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2845 ATGGCGGTCGATCTGATGAGTTTTCCAAAGATGGATGATCAAATGGCTATACAGGAGGCTGCATCGCAAGGATTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCCTCAAGCCATGTTGATTGCTCTGATTTAACTGATGCAACCGTTTCCAAGTTCAAGAAAGTGATCTCTCTCCTCAATCGGACCGGTCACGCTAGATTCCGGCGAGGTCCGGTTTCTTCGACATCCTCCTCGTCGTCCGGTTCATCTGCTCATCTCTCTTTTCCTCAAAATCAGGCGATGAATCTCACTCCTACTCCGTTTACTTCACCGGCCGCGGTTCCTGCTCCGCCGTTCACCGCTCCGAAAGTCGTCGCTGCGGCGGCGAACATCCTTCAGTCGCAGCCTCAGAGCATGACTCTCGATTTCACTAGGCCGAATATTTTGAACTCAAATCCTAAGGGAACCGATTTGGAATTTTCTAAGGAGACCTTCAGCGTCTCGTCCAGCTCCTCGTTTATGTCCTCAGCCATCACCGGAGACGGAAGCGTATCCAACGGAAAGTTAGGAACGTCGATCTTCTTAGCACCAGCGCCGACTGCTTCCGGTGGTAAGCCGCCGCTCTCGGCGGCGCCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAAGATTTGTCTGGAAAATTCTCCGGGTCAACATCTGCTTCCGGCAAATGCCATTGCTCAAAGAGAAGAAAAAATCGTACGAAGAAGACGATTCGAGTCCCAGCGATTAGTTCAAAAATCGCAGATATTCCACCGGACGAGTACTCGTGGAGGAAGTATGGTCAGAAGCCGATCAAAGGATCTCCATACCCACGGGGATATTACAAGTGTAGCACGATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAGCACCGCCATACGCAGAGCTCGTTGCCGGAAAATATGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1032 50.58 MAVDLMSFPKMDDQMAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPVSSTSSSSSGSSAHLSFPQNQAMNLTPTPFTSPAAVPAPPFTAPKVVAAAANILQSQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSAAPYKKRCHEHDHSEDLSGKFSGSTSASGKCHCSKRRKNRTKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAGVALVFEST 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35518474 35520087 + CaPI482276_05g028450.1 Cam05g2845 128249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2845 343 Pfam Plant zinc cluster domain 212 263 IPR018872 -
Cam05g2845 343 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 326 IPR044810 GO:0003700(InterPro)
Cam05g2845 343 MobiDBLite consensus disorder prediction 74 92 - -
Cam05g2845 343 ProSiteProfiles WRKY domain profile. 260 326 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2845 343 Pfam WRKY DNA -binding domain 267 323 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2845 343 FunFam WRKY transcription factor 65 249 326 - -
Cam05g2845 343 SMART WRKY_cls 265 325 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2845 343 MobiDBLite consensus disorder prediction 72 92 - -
Cam05g2845 343 SUPERFAMILY WRKY DNA-binding domain 263 325 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam05g2845 343 Gene3D WRKY domain 244 318 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1744 Cam-Chr1:31053682 Cam05g2845 Cam-Chr5:35518474 2.40E-54 dispersed
Cam05g2845 Cam-Chr5:35518474 Cam06g1521 Cam-Chr6:26703692 5.50E-71 dispersed
Cam05g2845 Cam-Chr5:35518474 Cam05g2221 Cam-Chr5:30489146 1.60E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52051 PF03106 WRKY 6.50E-26 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2845 - - - 0.0