Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2849 ATGGGGTTTGACTGGAATGGCTGGCTGGCGATTGGCTGTGGTTTGAAGATGCAGACAGCAACTATAGCTGGAAATGGTAGAGCAGGACAAGCAACTCTTGAATTTCAAAGGGGGAGAAAAAAGATGGGTGATCTCGAGAATGATGAAATGGGTTTTAGGAATTCGAATGAAGGGTTAATGAATTGTCCATCAACAATGGCGATGGGGTCTTTCTATGGGTCGGGTTGGGATCCACTGGTTTCTTTAGGTCAAAGTGAGAATTTTGGGGCAGCTTCTTCAATGGTTTCCTCTCATGGCGAATTTTCCAATTCTTTTCCTGTTGTTTTGGAGAACCATGGAGGGAGTGGGACTGCACAACAAGGTGTTCAATATCCGACAGATTTGGAGATGAGTACGAAGTTGCCATGTTTTGGCAGTGGGAATTATTCAGACATGTTTGGTTCTTCTTTTGGTCTTGCTGGGCAGATTCTTGGTGGGTGTTCTTCAAATTACAGAAATGCACAAACATCACAAGAAAATTTACCATTATCTGGTGAAGAAACTGCTGTAGGATCACCAAATGGTAAAATCAGAAAACGAGCTCTTGATTCCACTTTCCCATTTAGTCCAAATAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAAGAAGAGAAGAATGCAGAAATGGAGCAAAACTTAGGTGGGAATTCACGTGGTAAGGCAACTGGAAAACAAACTAAAGAAAAATCTAATAATAGTGCTGAAGCTCCTAAGGAAAATTACATTCATGTTCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGGAAGGCTGTAATGCTTGATGAGATTATCAACTATGTTCAATCACTGCAACAGCAGGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAACCCGGACGTGAATATCGATATTGAGAGGATTTTATCCAAAGATATTTTCCACGCACGAGGCAGCAATGGAACTGTTCTTGGATTTGATCCCGGGTTGAGCGCTGTTTCCCCAGTCCCTCCTCACCGAATGTTTCAGTTTCAAGGGACGATGTCGAATATGGCAACCACATCCACACAGTTTCCTCCTTTGCCTCAGACGATGTTAGAAAGCGATATTCAAAGTCTTCTTCAAATGGGATTCGACTCGGGTTCGGCCCTTGACAATTTGGGACCAAACGGGCGGTTGAAACCAGAGCCCTAA 1308 43.2 MGFDWNGWLAIGCGLKMQTATIAGNGRAGQATLEFQRGRKKMGDLENDEMGFRNSNEGLMNCPSTMAMGSFYGSGWDPLVSLGQSENFGAASSMVSSHGEFSNSFPVVLENHGGSGTAQQGVQYPTDLEMSTKLPCFGSGNYSDMFGSSFGLAGQILGGCSSNYRNAQTSQENLPLSGEETAVGSPNGKIRKRALDSTFPFSPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQNLGGNSRGKATGKQTKEKSNNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNIDIERILSKDIFHARGSNGTVLGFDPGLSAVSPVPPHRMFQFQGTMSNMATTSTQFPPLPQTMLESDIQSLLQMGFDSGSALDNLGPNGRLKPEP 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35551208 35554957 - CaPI482276_05g028490.1 Cam05g2849 128253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2849 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 336 IPR036638 GO:0046983(InterPro)
Cam05g2849 435 MobiDBLite consensus disorder prediction 206 220 - -
Cam05g2849 435 CDD bHLH_AtBPE_like 261 346 - -
Cam05g2849 435 MobiDBLite consensus disorder prediction 194 281 - -
Cam05g2849 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 321 IPR011598 GO:0046983(InterPro)
Cam05g2849 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 137 397 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam05g2849 435 SMART finulus 277 327 IPR011598 GO:0046983(InterPro)
Cam05g2849 435 Gene3D - 268 340 IPR036638 GO:0046983(InterPro)
Cam05g2849 435 MobiDBLite consensus disorder prediction 221 251 - -
Cam05g2849 435 Pfam Helix-loop-helix DNA-binding domain 274 322 IPR011598 GO:0046983(InterPro)
Cam05g2849 435 FunFam Basic helix-loop-helix transcription factor 268 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2537 Cam-Chr5:33213339 Cam05g2849 Cam-Chr5:35551208 3.00E-44 dispersed
Cam05g2849 Cam-Chr5:35551208 Cam08g2146 Cam-Chr8:26851961 1.10E-47 dispersed
Cam05g2849 Cam-Chr5:35551208 Cam02g0519 Cam-Chr2:5910378 7.20E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52052 PF00010 HLH 4.60E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2849 - - - 0.0