Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g2850 | ATGGTTATGGAAGTTACTTCTGAGTCTCAGCAACATTCTCACTACCATTACCATAGCCAGGCAAGTTCAGCAGGAGTTGTCTCTAACACCATGTCAAATAGCTTCTTAGCTTCTCACCACTCCAATGGAGATTTTTATTTTTCTGTAATGCCACTTAAGTCAGATGGGTCTCTTTGTATCATGGAATCAATCAGCGCATCACAACCTCAAGAAACATTGCCAAATATCTCACCAAAATTGGAGGACTTTCTTGGTGGTGCAACTCATGGAAAAGAGGCCACAACTCTAAGCTTAGACAACATATATTACAATCAAAATAATGAGGTTGATTCAGAGAGTCAACATTCTTTGGATCTTTTTAAGCAACAAGAGCAAATACATATTCTTTTTCATTCTCAGCGATATTATTCTGGACTGCTCCAGTATCCTACTGAGGATCCTAGCAAGGAGTCTCATATTGCAAGCTGTTATTCTGAAATTCAACAAGATATGGAGCAGCGGATAAATGGCTGCTGCTTTGGAGGGATGAATTGCCAAGATTTGCAGCCACTTAGCTTGTCCACGAGTCCTAGTTCTCAGTCTAGTTGTGTTACTGCTCCAAGCCAAATTTCTCAACCTGGACCAGCCACCATGGAAAAAAAGAAAAGGGCTTTCGACAATCGAAAGCAGTCGGTCCATCGGAAGTCAATCGACACGTTCGGACAAAGAACTTCGCAGTACAGAGGTGTGACAAGGCATAGATGGACTGGTAGATGTGAGGCTCATTTGTGGGACAATAGTTGTAAGAAGGAAGGTCAAACGAGGAAAGGAAGACAAGTGTATCTTGGTGGCTATGATATGGAGGAAAAAGCAGCAAGAGCTTATGATCTTGCAGCTCTCAAGTACTGGGGACCCTCAACACATTTAAACTTCCCGCTAAAGAACTATCAACTTCAAATTGAAGAAATGAAGAATATGAACCGTCAAGAATACGTTGCACACCTGAGAAGGAAAAGCAATGGATTCTCCAGGGGAGCTTCCATATACAGGGGAGTAACTAGACATCATCAACATGGGAGATGGCAAGCTCGAATCGGAAGAGTCGCAGGGAATAAAGACCTCTATCTTGGAACATTTGGCACACAAGAGGAAGCTGCAGAAGCATATGACATAGCAGCTATCAAGTTTCGCGGTGTAAATGCTATTACAAACTTCGACACGTCAAGGTACAATGTAGAAAGGATCATAGCAAGCAGTAGCCTCCTTTCAGGAGAGTTTGCGAGGCGAAACACAGAACAAAAACCAACCAACACCATCAAACATAAAGATCCAACACAGAACATTGATAAAATCGATGATCCCTCGAAGATATCAAACAACTTGGACCGGAAGGCGGTATTCATCGACAACCCGTTATTGGATCCAAGTGCAATGGTAATGGTGAATTTTTCAAGCAAGTACAAGGCTCACTTCCCCAATGCTTCCTCTGCTGTGAGCAGCAGCAGCAGCTCAAGGGAAACAAGTCCTGATAAGTGA | 1515 | 42.77 | MVMEVTSESQQHSHYHYHSQASSAGVVSNTMSNSFLASHHSNGDFYFSVMPLKSDGSLCIMESISASQPQETLPNISPKLEDFLGGATHGKEATTLSLDNIYYNQNNEVDSESQHSLDLFKQQEQIHILFHSQRYYSGLLQYPTEDPSKESHIASCYSEIQQDMEQRINGCCFGGMNCQDLQPLSLSTSPSSQSSCVTAPSQISQPGPATMEKKKRAFDNRKQSVHRKSIDTFGQRTSQYRGVTRHRWTGRCEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHLNFPLKNYQLQIEEMKNMNRQEYVAHLRRKSNGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGVNAITNFDTSRYNVERIIASSSLLSGEFARRNTEQKPTNTIKHKDPTQNIDKIDDPSKISNNLDRKAVFIDNPLLDPSAMVMVNFSSKYKAHFPNASSAVSSSSSSRETSPDK | 504 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35563139 | 35565650 | - | CaPI482276_05g028500.1 | Cam05g2850 | 128254 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g2850 | 504 | FunFam | AP2-like ethylene-responsive transcription factor | 340 | 401 | - | - | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 192 | 208 | - | - | |
| Cam05g2850 | 504 | PRINTS | Ethylene responsive element binding protein signature | 381 | 401 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | PRINTS | Ethylene responsive element binding protein signature | 240 | 251 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 162 | 438 | - | - | |
| Cam05g2850 | 504 | Gene3D | AP2/ERF domain | 341 | 401 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | Gene3D | AP2/ERF domain | 238 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | ProSiteProfiles | AP2/ERF domain profile. | 239 | 305 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | Pfam | AP2 domain | 239 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | Pfam | AP2 domain | 342 | 391 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | SUPERFAMILY | DNA-binding domain | 238 | 306 | IPR016177 | GO:0003677(InterPro) | |
| Cam05g2850 | 504 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 238 | 307 | - | - | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 427 | 448 | - | - | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 212 | 227 | - | - | |
| Cam05g2850 | 504 | SMART | rav1_2 | 239 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | SMART | rav1_2 | 341 | 405 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 192 | 227 | - | - | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 422 | 448 | - | - | |
| Cam05g2850 | 504 | MobiDBLite | consensus disorder prediction | 485 | 504 | - | - | |
| Cam05g2850 | 504 | CDD | AP2 | 238 | 305 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | ProSiteProfiles | AP2/ERF domain profile. | 341 | 399 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Cam05g2850 | 504 | SUPERFAMILY | DNA-binding domain | 340 | 400 | IPR016177 | GO:0003677(InterPro) | |
| Cam05g2850 | 504 | CDD | AP2 | 340 | 401 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam05g2850 | Cam-Chr5:35563139 | Cam08g2145 | Cam-Chr8:26838530 | 2.40E-139 | dispersed | |
| Cam01g1825 | Cam-Chr1:31775597 | Cam05g2850 | Cam-Chr5:35563139 | 3.00E-130 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 52053 | PF00847 | AP2 | 6.50E-12 | CL0081 | Cam | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g2850 | K09285 | - | csv:101212143 | 768.074 |