Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2861 ATGCCGATGTACCAGCCTTCCTGTCGGAGAAGAGAGCCCGATTCGGAGCTGGGTTTAGGTGGTGGTGGGCAAGTTCTTGATGTGGAAACCGCCGTGAAAGATGGTATTCTTGGTGGCGGTGGCGGTGGAGGCGGTGGGTTAATTTGCGAGGGTGGAATGACTGAGAAATTGGATCTGAAGGAGATAGTGGAGGAGCTTCAGAATATTGAGGTTCCTTCGGTGTTTATTTGCCCAATTTCATTGGAGCCAATGCGAGATCCTGTGACCCTTTGTACAGGACAGACCTACGAACGATCCAACATCTTGAAATGGTTCTCTCTTGGTCATATCACATGCCCCACCACAATGCAAGAGCTTTGGGATGATTCAATCACTCCCAATAACACTCTTCACCAACTCATTTACAGTTGGTTTTCCCAAAAGTATTTGGCCATGAAGAAGAGGTCTGAGGATGTGCAGGGGAGAGCTCTTGAGCTCTTAGACACATTGAAGAAGGTCAAGGGCCAAGCTAGAGTCCGAGCTTTGAAGGACCTTCGTCAAGTTGTAGCTTCAAATTCGGCAAAGAACACTGTGGAAGGCAATGGTGGTGTTGCTTTGATTTCCTCTTTGTTGGGTCCTTTTACATCGCACGCGGTTGGCTCCGAAGCCATTGGGATTTTGGTGAACTTGGATCTCGATGCCGAGTCGAGGAGAAACCTTGTTCAACCTGCCAAGATTTCGTTAATAGTGGACATGTTGAACGAGGGATCCACAGATACCAAAATCAACTGCACAAGATTGATTGAAACGTTGCTCGATGGGGATGATTGTGGAGCGAACACTGTCTCGAGTTTAAGTCTCTTGGTTGGATTGTTAAGATTAATCAAAGAAAAGAAACACCCAAATGGTGTTCTTGCTGGGTTAAAGTTGCTAAAAGTTCTGTGCTCCCAAGAACCAGTGAGGAACTCAGTAGTGAGCATTGGGGCAATACCGCAATTGATCGAAATTCTCCCGAATTTCGACCCCGAGTGTTTGGAATTAGCCCTTCATGTATTGGACTCACTCTCATCCCTCTCAGAGGGCAGGGTGGCCTTGAAAGATTGCCCCAAAACCATTCCAAACTTAGTCAAATTGTTAATGAGAGTCTCAGAGAGCTGCACTCAGCTGGCTTTGTCAATCCTATGGGCAGTCTGTAAACTCGCCCCTGAAGAATGTGCATCCCAAGCTGTGGAAGCAGGTTTAGCAGCCAAGCTTCTTTTGGTGATTCAGAGCGGTTGCAACCCCGTTCTGAAACAACGCTCCGCCGAGCTTCTGAAGCTCTGCAGCTTAAATTACACAGCAACCCTATTCATATCCAAGTGTAAGCTTACAAGGACAATACAATAA 1365 46.96 MPMYQPSCRRREPDSELGLGGGGQVLDVETAVKDGILGGGGGGGGGLICEGGMTEKLDLKEIVEELQNIEVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHITCPTTMQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRALKDLRQVVASNSAKNTVEGNGGVALISSLLGPFTSHAVGSEAIGILVNLDLDAESRRNLVQPAKISLIVDMLNEGSTDTKINCTRLIETLLDGDDCGANTVSSLSLLVGLLRLIKEKKHPNGVLAGLKLLKVLCSQEPVRNSVVSIGAIPQLIEILPNFDPECLELALHVLDSLSSLSEGRVALKDCPKTIPNLVKLLMRVSESCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35619742 35621106 - CaPI482276_05g028610.1 Cam05g2861 128265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2861 454 CDD RING-Ubox_PUB 72 122 IPR045210 -
Cam05g2861 454 ProSiteProfiles U-box domain profile. 70 144 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2861 454 Pfam U-box domain 71 141 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2861 454 PANTHER WDSAM1 PROTEIN 67 449 IPR045185 GO:0061630(InterPro)
Cam05g2861 454 MobiDBLite consensus disorder prediction 1 22 - -
Cam05g2861 454 Gene3D - 144 448 IPR011989 -
Cam05g2861 454 SUPERFAMILY ARM repeat 227 437 IPR016024 -
Cam05g2861 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 143 IPR013083 -
Cam05g2861 454 SMART Ubox_2 74 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam05g2861 454 SUPERFAMILY RING/U-box 67 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2861 Cam-Chr5:35619742 Cam08g2137 Cam-Chr8:26746835 1.30E-165 dispersed
Cam05g2861 Cam-Chr5:35619742 Cam01g1597 Cam-Chr1:29485252 8.90E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2861 - - - 0.0