Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2872 ATGCTGTTTATTGTCGTATCACTACCTAAGTTGCCGTCTACCCAGATTTCTTTGGTGGGGTTCTCATTATCTTTTGAGGTATTTCACGTTTTCTTTGATTTCTTCTTTTCCTGGGATTTGGGCTGTTCTGATTTGGGGTTCTTGTTAATGGGTCTTTTTTGTCTTTCTGGGATGCTTTTGTTTTCGGATGTTCTATTCTGCATTCCGTTTCTGGGTTGTCTCAATGTGACTTTGGATGTTTCTGGTTCTTTGATTGGTTTACTTTGTGTTGCTGCTGTTCTATTATCTATAGGCTTCAATTTTCTTTTAGTTAAGTTTTTGTATGGAGTTCTCGGTTTAGGAAGTTTGCGGGGACCTCACCTCATACTGAAAGCCCCTAGAGCTTTACCTGAAGCTGTCCTAATCTGGGGAGTTTCTTATTCTAGGAAGGGCATTCTATTGATAAAAATGTCATCTGCCAATCCTTATTTTGATGACATTCGGACCAAACCTGAGGTTATTGATCCTCCCCAAGATGATGACATGATGGATGTTAGTGAAAGTGTGAGTGATCCTGCTCGAAATGGAGGAAAACCTAACGTAGCTGTCTCTAGCAGTGTTCGTGAGCTGTTGGAGTGCCCTGTTTGCTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCGAATGGTCACACGTTGTGTTCAGGTTGCAAGCCTAGGGTGCACAACCGATGTCCAACCTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCATTAGAGAAGGTGGCTGCATCTCTGGAACTTCCATGTAAATATCAAACTTTTGGATGTGTAGGCATATACCCATACTACAGCAAGCTGAAACACGAATCTCAATGTGTGTATCGGCCCTATAACTGTCCATATGCGGGATCGGAATGCACAGTTATTGGCGATATCCCATTTTTGGTAGCCCACCTCAAGGATGATCACAAAGTTGACATGCATAATGGAAGCACTTTCAATCACCGGTATGTCAAGTCAAATCCGCAAGAGGTTGAAAATGCCACCTGGATGTTAACGGTTTTCAGCTGTTTTGGTCAATACTTTTGTTTACATTTCGAAGCTTTCCAGCTCGGAATGGCACCTGTCTACATAGCTTTCTTGCGGTTTATGGGCGATGATAATGAAGCAAAGAACTATAGTTATAGTCTTGAGGTTGGTGGAAATGGGAGGAAGATGGTGTGGCAAGGAGTGCCACGGAGTATTCGGGACAGTCATCGGAAGGTCCGAGACAGTTTTGACGGTCTTATTATCCAACGTAATATGGCGCTCTTCTTCTCGGGGGGAGATCGGAAAGAATTGAAACTCAGGGAATGTTCTTTACTTTCTAGGATCTATTGCCAGTTTCAGGATTCTTTTCTTTCATGCTCTCTTGTGATTAGGGATCAATCTGTCAGAATTTTCCTAGGCCTATTTGAGATGTCACTCAAGTTACACCATATTGACTTAAAGGGTGGTTCAGGTACCCAGAAAAGGCTAAAGGATCTCTCGGCTCAGTCTGCCAATAAGTACTGTGCCGATTGTGGTTCTCCAGATCCAAAATGGGTATCTGTGAGTTTTGGGGCATTTATTTGCATCAAGTGCTCTGGAGTACACCGAAGCCTTGGAGTGCATATATCTAAGGTTCTTTCGGTGAAGTTAGATGATTGGACAGATGAACAAGTTGATGCTTTGATGAGTGTAGGTGGAAATACTGCCGTAAACAAAAAGTATGAAGTTTGCATCCCAGATGGCAATAAAAAGCCAAAACCAGACTCCTCCATAGAGGAGCGTTTGGATTTTATAAGGAAAAAATATGAGCTGCTGCAATTTGCAAGTCTAGACGATCAGTTTTTCTGTCCTTTTCCACCACCGCAGAAGAGAAATTCATCACTCTCGCACAGCGCTTCCAGTACTGATGTAAACCTAGAAAGGAGGAATTATGAAAAACTACCAACAAAAACTCGAATTGGAAGTGCATTCCGGAACAGCTGGGGAAGAAAAGATTCTGAACATAGGAACTGCAAGAAGGGAAATGCAAATGCATTGGTATTAAGCAGCTCAATGGCGGGTATGATTGAATTCGTTGGTTTAATCAAGGTCAACGTGGTTAGAGGAACCAATTTAGCTGTCAGGGATGTCGTGACGAGTGATCCATATGTAATTCTCTCGTTGGGCCACCAATCAGTGAAGACACGAGTTATAAAGAGTAGTTTGAATCCAGTCTGGAATGAGAGCCTAATGTTGTCTATTCCAGATTACATTCCTCCATTAAAAGTGCTTGTGTATGACAAAGATACATTTTCAACCGATGACTTCATGGGTGAAGCAGAAATCGATATCAATCCACTGCTCACCGCAGCCCGAGCCTGCGAGAGGTCCACAATCAGTGAACCAATGCAGTTAGGAAAATGGGTTGCAAGCAAGGAGAACACTCTTGCAAAGGATGGCATCATCAGTCTTGTAGATGGGAAGATCCGACAAGACATCTCTTTGAAGCTGCAGAACGTCGAGCGGGGCGTGCTGGAGATGGAGCTTGAATGTGTTCCTCTTTCTCAGTAG 2565 43.04 MLFIVVSLPKLPSTQISLVGFSLSFEVFHVFFDFFFSWDLGCSDLGFLLMGLFCLSGMLLFSDVLFCIPFLGCLNVTLDVSGSLIGLLCVAAVLLSIGFNFLLVKFLYGVLGLGSLRGPHLILKAPRALPEAVLIWGVSYSRKGILLIKMSSANPYFDDIRTKPEVIDPPQDDDMMDVSESVSDPARNGGKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQTFGCVGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRECSLLSRIYCQFQDSFLSCSLVIRDQSVRIFLGLFEMSLKLHHIDLKGGSGTQKRLKDLSAQSANKYCADCGSPDPKWVSVSFGAFICIKCSGVHRSLGVHISKVLSVKLDDWTDEQVDALMSVGGNTAVNKKYEVCIPDGNKKPKPDSSIEERLDFIRKKYELLQFASLDDQFFCPFPPPQKRNSSLSHSASSTDVNLERRNYEKLPTKTRIGSAFRNSWGRKDSEHRNCKKGNANALVLSSSMAGMIEFVGLIKVNVVRGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKSSLNPVWNESLMLSIPDYIPPLKVLVYDKDTFSTDDFMGEAEIDINPLLTAARACERSTISEPMQLGKWVASKENTLAKDGIISLVDGKIRQDISLKLQNVERGVLEMELECVPLSQ 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35714469 35726436 + CaPI482276_05g028720.1 Cam05g2872 128276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2872 854 ProSiteProfiles Zinc finger SIAH-type profile. 259 319 IPR013010 GO:0008270(InterPro)
Cam05g2872 854 SUPERFAMILY ArfGap/RecO-like zinc finger 498 613 IPR037278 -
Cam05g2872 854 SMART C2_3c 699 794 IPR000008 -
Cam05g2872 854 SUPERFAMILY TRAF domain-like 259 441 - -
Cam05g2872 854 ProSiteProfiles C2 domain profile. 680 796 IPR000008 -
Cam05g2872 854 CDD ArfGap 501 607 - -
Cam05g2872 854 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 PRINTS HIV Rev interacting protein signature 550 571 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 314 IPR013083 -
Cam05g2872 854 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 612 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 FunFam stromal membrane-associated protein 1 isoform X1 488 618 - -
Cam05g2872 854 Pfam Sina, TRAF-like domain 350 444 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam05g2872 854 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 494 854 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cam05g2872 854 Pfam Putative GTPase activating protein for Arf 499 613 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 CDD RING-HC_SIAHs 204 242 - -
Cam05g2872 854 FunFam E3 ubiquitin-protein ligase SINAT5-like 315 447 - -
Cam05g2872 854 ProSiteProfiles Zinc finger RING-type profile. 206 242 IPR001841 -
Cam05g2872 854 FunFam E3 ubiquitin-protein ligase SINAT3 258 314 - -
Cam05g2872 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 257 IPR013083 -
Cam05g2872 854 CDD Sina 320 445 - -
Cam05g2872 854 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 697 791 IPR035892 -
Cam05g2872 854 Gene3D Arf GTPase activating protein 487 619 IPR038508 -
Cam05g2872 854 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 696 854 - -
Cam05g2872 854 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 206 241 IPR049548 -
Cam05g2872 854 Pfam Sina, zinc finger 255 330 - -
Cam05g2872 854 Gene3D C2 domain 697 851 IPR035892 -
Cam05g2872 854 SMART arf_gap_3 498 619 IPR001164 GO:0005096(InterPro)
Cam05g2872 854 FunFam E3 ubiquitin-protein ligase SINAT5-like 164 257 - -
Cam05g2872 854 SUPERFAMILY RING/U-box 200 246 - -
Cam05g2872 854 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 315 445 IPR008974 GO:0005515(InterPro)
Cam05g2872 854 CDD C2_ArfGAP 697 841 - -
Cam05g2872 854 Pfam C2 domain 699 787 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0781 Cam-Chr1:8736256 Cam05g2872 Cam-Chr5:35714469 6.20E-167 dispersed
Cam01g0783 Cam-Chr1:8752286 Cam05g2872 Cam-Chr5:35714469 1.60E-140 dispersed
Cam03g0819 Cam-Chr3:9546262 Cam05g2872 Cam-Chr5:35714469 3.00E-86 dispersed
Cam05g2872 Cam-Chr5:35714469 Cam06g0099 Cam-Chr6:2913643 4.30E-125 dispersed
Cam05g2872 Cam-Chr5:35714469 Cam01g2572 Cam-Chr1:37364803 1.70E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2872 K04506 - csv:101221541 708.753