Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam05g2876 | ATGGCCCTTCTCTCTGCTGAGCCTCGATTTCATGTCTTGGCTGTTGATGACAGCCTTGTTGATAGGAAGCTCATTGAAAGGCTCCTCAAAACTTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAAAGAAATGGAAGCACGCATTCTCCTATTTCCCCTGAAAATCATCATCATCATCATCATCATCATCAACAACAAGAGATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTCAGAAAGATCAAGGAATCTGACTCACTTAAAGACATTCCTGTTGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGCTTGGAAGAAGGAGCTGAGGAGTTTTTGCTAAAACCAGTGAAATTATCTGATGTCAATAAGCTTAAGCCTTTCATATGTAGAGGTAAAGCCAAGGAAATGGATTTCAACAATCTCAAGAGAAAGGAAATGGAAAAGAGCCAATCATCTGAGAGAACAAGAACAAAATACAATGAACTTTTCTGA | 570 | 39.3 | MALLSAEPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPISPENHHHHHHHHQQQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDFNNLKRKEMEKSQSSERTRTKYNELF | 189 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 35752053 | 35753488 | - | CaPI482276_05g028760.1 | Cam05g2876 | 128280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam05g2876 | 189 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
| Cam05g2876 | 189 | MobiDBLite | consensus disorder prediction | 57 | 77 | - | - | |
| Cam05g2876 | 189 | SMART | REC_2 | 10 | 151 | IPR001789 | GO:0000160(InterPro) | |
| Cam05g2876 | 189 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 9 | 179 | IPR045279 | GO:0009736(InterPro) | |
| Cam05g2876 | 189 | Gene3D | - | 11 | 186 | - | - | |
| Cam05g2876 | 189 | ProSiteProfiles | Response regulatory domain profile. | 11 | 155 | IPR001789 | GO:0000160(InterPro) | |
| Cam05g2876 | 189 | SUPERFAMILY | CheY-like | 9 | 147 | IPR011006 | - | |
| Cam05g2876 | 189 | CDD | REC_typeA_ARR | 12 | 150 | - | - | |
| Cam05g2876 | 189 | Pfam | Response regulator receiver domain | 78 | 147 | IPR001789 | GO:0000160(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam01g0759 | Cam-Chr1:8435561 | Cam05g2876 | Cam-Chr5:35752053 | 2.20E-51 | dispersed | |
| Cam05g2692 | Cam-Chr5:34318970 | Cam05g2876 | Cam-Chr5:35752053 | 7.00E-38 | dispersed | |
| Cam05g2876 | Cam-Chr5:35752053 | Cam10g1583 | Cam-Chr10:29562291 | 1.30E-50 | dispersed | |
| Cam05g2876 | Cam-Chr5:35752053 | Cam06g1813 | Cam-Chr6:29205961 | 1.10E-41 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 52056 | PF00072 | Response_reg | 6.40E-16 | CL0304 | Cam | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam05g2876 | K14492 | - | csv:101207245 | 285.804 |