Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam05g2893 | ATGGATCAATTTTCCAAAGACCTCGACAAGGAAATCTGCAACGCGGAGAAATTTGAGAGAGAAGAAGAAGACGACGACGGCGACGAGGAGCAAGAAGAGGGACAAGACGACTGGGATGATTGGAATGCAGACGAGGAAGAAGGAGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTTTAATCACTGCGACACTCTGTTCAACCATTGCAACTCCGTCCACTATTTCGATTTTCACAGCATCAGAAGGGCTCTGGGTTTAGACTTCTATGGTTCCTTCAAAATTATCAACTACATACGATCTCAGGTAGCAGATAATAGGTGCTGGAGCTGTGGTCTCTCGTGTAAATCAAACCAGGATTTACAGAACCATTTACACAAAATTTTAAATCTCGATGACATAAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTACAGAAGACGAGGAGGATGATGATGAAATGACTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAAGAAAATGGAGTGGAAGATTGTAGTTCTACTTCACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGGCGAGATTGAGAATACTGTGAAAACCACGGAGACTTTGGGGTTGAAAGATGAGATGCAGGAAGACATTCAATTTAAATTAGCCAGACGGAATTTTGATAGAAAGGATATAAAAAATGCAAATGAAAGTTACTTCGGTTCATATAGCTCTTTTGGCATACACAAAGAGATGTTAAGCGACAAGGTCAGAATGGAAGCTTATATGGAGGCGATTTTGCAAAATCCATCTCTGTTCCACAATGCTGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTTTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGTGGAACAGGAAACAAACTAGAGATTGTGACATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGATAAGAACTTAGAGATTGCGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTACGAATCAATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACAGCCACAATTCTTGTTGCTGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTTAGAATGTCTTGTGTAGGGAAGGAACTTGTAAAAGATGCTGCCAACACTCCCATCGTTGATATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATCCTCCATACTTTCGATCTAGCAACCATGCATCCTGATGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCAAATTCACATGATCCTTCAAACTCAAATAGTGTTGAAGTTGAAGCATCTCGCTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCCCAAACCATATTAACCTTCAGAGAGCCGGTTGCTATAACATCTAGAAAGTCAAGAACCAACATATCAGCACCAGTAGGTAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGTCTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATCGCTGGTGATGGTAGGAAGCACCACTGGCCTGTACAGCTGTTCACACTAAGATAG | 1866 | 42.5 | MDQFSKDLDKEICNAEKFEREEEDDDGDEEQEEGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKFNHCDTLFNHCNSVHYFDFHSIRRALGLDFYGSFKIINYIRSQVADNRCWSCGLSCKSNQDLQNHLHKILNLDDIKALWDDDKYLKPFRQDDPLLYSFTEDEEDDDEMTRENLPFHPNQNKENGVEDCSSTSHGYLNAPSNLEGEIENTVKTTETLGLKDEMQEDIQFKLARRNFDRKDIKNANESYFGSYSSFGIHKEMLSDKVRMEAYMEAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLWWNRKQTRDCDMSSGTIEVVHGMVEELDKNLEIAPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVKDAANTPIVDIVDANDLVTSPAILHTFDLATMHPDEVDFTASTELEPNSHDPSNSNSVEVEASRCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPVAITSRKSRTNISAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR | 621 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 36011130 | 36015337 | + | CaPI482276_05g028930.1 | Cam05g2893 | 128297 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam05g2893 | 621 | MobiDBLite | consensus disorder prediction | 18 | 41 | - | - | |
Cam05g2893 | 621 | Gene3D | Vaccinia Virus protein VP39 | 239 | 409 | IPR029063 | - | |
Cam05g2893 | 621 | Pfam | Arginine methyltransferase oligomerization subdomain | 411 | 559 | - | - | |
Cam05g2893 | 621 | PANTHER | PROTEIN ARGININE N-METHYLTRANSFERASE | 216 | 602 | IPR025799 | GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro) | |
Cam05g2893 | 621 | SUPERFAMILY | beta-beta-alpha zinc fingers | 34 | 173 | IPR036236 | - | |
Cam05g2893 | 621 | Gene3D | - | 412 | 612 | - | - | |
Cam05g2893 | 621 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 254 | 559 | IPR029063 | - | |
Cam05g2893 | 621 | Pfam | Protein arginine N-methyltransferase 3, C2H2 zinc finger domain | 87 | 151 | IPR049482 | - | |
Cam05g2893 | 621 | FunFam | Protein arginine N-methyltransferase 6 | 244 | 409 | - | - | |
Cam05g2893 | 621 | Pfam | Methyltransferase domain | 290 | 405 | IPR041698 | - | |
Cam05g2893 | 621 | CDD | AdoMet_MTases | 290 | 408 | - | - | |
Cam05g2893 | 621 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cam05g2893 | 621 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cam05g2893 | 621 | ProSiteProfiles | SAM-dependent methyltransferase PRMT-type domain profile. | 248 | 579 | IPR025799 | GO:0016274(InterPro)|GO:0018216(InterPro) | |
Cam05g2893 | 621 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 79 | IPR013087 | - | |
Cam05g2893 | 621 | Coils | Coil | 1 | 21 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1595 | Cam-Chr3:30931915 | Cam05g2893 | Cam-Chr5:36011130 | 5.20E-57 | dispersed | |
Cam05g2893 | Cam-Chr5:36011130 | Cam06g1274 | Cam-Chr6:24055325 | 1.40E-32 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52061 | PF13649 | Methyltransf_25 | 8.00E-10 | CL0063 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam05g2893 | K11436 | - | csv:101215999 | 1049.65 |