Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam05g2893 ATGGATCAATTTTCCAAAGACCTCGACAAGGAAATCTGCAACGCGGAGAAATTTGAGAGAGAAGAAGAAGACGACGACGGCGACGAGGAGCAAGAAGAGGGACAAGACGACTGGGATGATTGGAATGCAGACGAGGAAGAAGGAGAAGAAGCATTTGATTCGAATTTTCTGTGTCTGTTCTGCAACTCAAAGTTTAATCACTGCGACACTCTGTTCAACCATTGCAACTCCGTCCACTATTTCGATTTTCACAGCATCAGAAGGGCTCTGGGTTTAGACTTCTATGGTTCCTTCAAAATTATCAACTACATACGATCTCAGGTAGCAGATAATAGGTGCTGGAGCTGTGGTCTCTCGTGTAAATCAAACCAGGATTTACAGAACCATTTACACAAAATTTTAAATCTCGATGACATAAAGGCTCTTTGGGATGATGATAAATATCTAAAACCCTTCAGGCAAGATGATCCCCTCCTGTACAGTTTTACAGAAGACGAGGAGGATGATGATGAAATGACTAGAGAAAATCTTCCATTTCATCCAAACCAAAACAAAGAAAATGGAGTGGAAGATTGTAGTTCTACTTCACATGGTTATTTGAATGCTCCAAGCAACTTAGAGGGCGAGATTGAGAATACTGTGAAAACCACGGAGACTTTGGGGTTGAAAGATGAGATGCAGGAAGACATTCAATTTAAATTAGCCAGACGGAATTTTGATAGAAAGGATATAAAAAATGCAAATGAAAGTTACTTCGGTTCATATAGCTCTTTTGGCATACACAAAGAGATGTTAAGCGACAAGGTCAGAATGGAAGCTTATATGGAGGCGATTTTGCAAAATCCATCTCTGTTCCACAATGCTGCTGTGATGGATGTAGGCTGTGGAACAGGCATACTTAGTCTTTTTGCTGCAAAAGCAGGTGCATCAAGAGTTATTGCAGTTGAAGCGAGTGAAAAGATGGCAGCAGTGGCCACCCAAATTGCAAAAGACAATGGCCTCTGGTGGAACAGGAAACAAACTAGAGATTGTGACATGTCAAGTGGGACTATAGAAGTGGTTCATGGTATGGTAGAAGAACTCGATAAGAACTTAGAGATTGCGCCTCACAGTGTTGACGTATTATTGAGTGAATGGATGGGCTATTGCTTGTTGTACGAATCAATGCTCAGCTCAGTACTCTTTGCAAGGGATCGGTGGTTGAAGCCTGGAGGTGCAATCTTACCAGATACAGCCACAATTCTTGTTGCTGGATTTGGAGTTGGTGGAACTAGTCTTCCATTTTGGGAAAATGTGTATGGTTTTAGAATGTCTTGTGTAGGGAAGGAACTTGTAAAAGATGCTGCCAACACTCCCATCGTTGATATTGTGGATGCTAATGATTTAGTAACTAGTCCTGCAATCCTCCATACTTTCGATCTAGCAACCATGCATCCTGATGAAGTAGACTTCACTGCAAGTACCGAGTTGGAACCAAATTCACATGATCCTTCAAACTCAAATAGTGTTGAAGTTGAAGCATCTCGCTGTCATGGAGTTGTCCTATGGTTTGAAACTGGTTTTACAAGCAGATTTTGCAAGGAATCACCGGCTGTTCTGTCTACATCTCCATACACTCCCAAAACTCACTGGTCCCAAACCATATTAACCTTCAGAGAGCCGGTTGCTATAACATCTAGAAAGTCAAGAACCAACATATCAGCACCAGTAGGTAGCCATGCCTGCCCTGCTGTCAAAGTTCATTTGCGTCTTAGCATTGCCCGTGCGCCTGAACATCGAAGCATTGACATTTCACTAGAGACTACTGGGATCGCTGGTGATGGTAGGAAGCACCACTGGCCTGTACAGCTGTTCACACTAAGATAG 1866 42.5 MDQFSKDLDKEICNAEKFEREEEDDDGDEEQEEGQDDWDDWNADEEEGEEAFDSNFLCLFCNSKFNHCDTLFNHCNSVHYFDFHSIRRALGLDFYGSFKIINYIRSQVADNRCWSCGLSCKSNQDLQNHLHKILNLDDIKALWDDDKYLKPFRQDDPLLYSFTEDEEDDDEMTRENLPFHPNQNKENGVEDCSSTSHGYLNAPSNLEGEIENTVKTTETLGLKDEMQEDIQFKLARRNFDRKDIKNANESYFGSYSSFGIHKEMLSDKVRMEAYMEAILQNPSLFHNAAVMDVGCGTGILSLFAAKAGASRVIAVEASEKMAAVATQIAKDNGLWWNRKQTRDCDMSSGTIEVVHGMVEELDKNLEIAPHSVDVLLSEWMGYCLLYESMLSSVLFARDRWLKPGGAILPDTATILVAGFGVGGTSLPFWENVYGFRMSCVGKELVKDAANTPIVDIVDANDLVTSPAILHTFDLATMHPDEVDFTASTELEPNSHDPSNSNSVEVEASRCHGVVLWFETGFTSRFCKESPAVLSTSPYTPKTHWSQTILTFREPVAITSRKSRTNISAPVGSHACPAVKVHLRLSIARAPEHRSIDISLETTGIAGDGRKHHWPVQLFTLR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36011130 36015337 + CaPI482276_05g028930.1 Cam05g2893 128297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam05g2893 621 MobiDBLite consensus disorder prediction 18 41 - -
Cam05g2893 621 Gene3D Vaccinia Virus protein VP39 239 409 IPR029063 -
Cam05g2893 621 Pfam Arginine methyltransferase oligomerization subdomain 411 559 - -
Cam05g2893 621 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 216 602 IPR025799 GO:0005634(PANTHER)|GO:0016274(InterPro)|GO:0018216(InterPro)
Cam05g2893 621 SUPERFAMILY beta-beta-alpha zinc fingers 34 173 IPR036236 -
Cam05g2893 621 Gene3D - 412 612 - -
Cam05g2893 621 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 254 559 IPR029063 -
Cam05g2893 621 Pfam Protein arginine N-methyltransferase 3, C2H2 zinc finger domain 87 151 IPR049482 -
Cam05g2893 621 FunFam Protein arginine N-methyltransferase 6 244 409 - -
Cam05g2893 621 Pfam Methyltransferase domain 290 405 IPR041698 -
Cam05g2893 621 CDD AdoMet_MTases 290 408 - -
Cam05g2893 621 MobiDBLite consensus disorder prediction 1 41 - -
Cam05g2893 621 MobiDBLite consensus disorder prediction 1 17 - -
Cam05g2893 621 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 248 579 IPR025799 GO:0016274(InterPro)|GO:0018216(InterPro)
Cam05g2893 621 ProSitePatterns Zinc finger C2H2 type domain signature. 58 79 IPR013087 -
Cam05g2893 621 Coils Coil 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1595 Cam-Chr3:30931915 Cam05g2893 Cam-Chr5:36011130 5.20E-57 dispersed
Cam05g2893 Cam-Chr5:36011130 Cam06g1274 Cam-Chr6:24055325 1.40E-32 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52061 PF13649 Methyltransf_25 8.00E-10 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam05g2893 K11436 - csv:101215999 1049.65