Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0005 ATGAGTTCATTCTTTGTTGGGTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGCAACTTCCACTGCTATCTTTAATCCTTTCAGTATCTTTTTGCTCTATAGATCTCTGAAGATTTCTTCCATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGAAAGCTATGGCTTCAATTGTGGGAAACTGTCATTGGAAATTGTTGCAAGATGCATCACCAGTATTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCTACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGAATGCTTCAAGATCAGTTTAATGTCAGTATGAATCATATTCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAAAACCCATCTGCTATAGATCAGAGGACGTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCAGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGATCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCTCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGTTGATGGGTTGCAGCATGTCAGCCCCCTTAACTTTGGGGATCCAGATAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGCTGGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACGTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACTGACTTAGATGTGACTCAACAAGATTACGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCCGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCAATTGATCTAGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCGAATAGACGTCTCAGCTGGGCAGGATTTCGAACATTCAGTCAAGAGGGACCCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACAGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCGGTTTTCACAAACGGATCTTCCAATTCGAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCTATTCGAGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTCGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCATGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGACACGAGCACATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAACTAGCACTATAATTTCTGATGCATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGTTAATCCTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGTAGTTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATAGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTAGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCGAATCAATGATGGTATCCAAATTGGAGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGCGTTCCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGTCAGGCATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATCGAGTTCTTGGATTGCTTCATATTATACCAGGCAAGCCTAAATTTTGTGGAAGAGTGTAA 3192 42.61 MSSFFVGFSSSSSSSSSSAATSTAIFNPFSIFLLYRSLKISSMNWFINGGVMETKAGLLGGGGKLWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARSSGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSVDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTFSQEGPTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNSSEYNKTQQIKNTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTMTISGSTINMIFVEQKLWDQDTSTSDHFIKNLRNSYAVPPKLFLLTSSISSSKTSTIISDAFTPTVILKPLRAGMLAASLHRVMGVGIKVNPRNGELPVLSLRSLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQIGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGQACTACLKGCKLPPIEGDRVLGLLHIIPGKPKFCGRV 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1856743 1863190 + CaPI482276_06g000050.1 Cam06g0005 128305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0005 1063 Pfam His Kinase A (phospho-acceptor) domain 456 521 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam06g0005 1063 CDD HisKA 456 517 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam06g0005 1063 SMART CHASE_2 169 370 IPR006189 -
Cam06g0005 1063 ProSiteProfiles Response regulatory domain profile. 908 1049 IPR001789 GO:0000160(InterPro)
Cam06g0005 1063 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 656 728 IPR003594 -
Cam06g0005 1063 Gene3D - 520 734 IPR036890 -
Cam06g0005 1063 ProSiteProfiles Response regulatory domain profile. 761 882 IPR001789 GO:0000160(InterPro)
Cam06g0005 1063 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 510 727 IPR036890 -
Cam06g0005 1063 Pfam CHASE domain 172 368 IPR006189 -
Cam06g0005 1063 FunFam Histidine kinase 4 428 519 - -
Cam06g0005 1063 ProSiteProfiles Histidine kinase domain profile. 463 732 IPR005467 -
Cam06g0005 1063 SMART HisKA_10 456 521 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam06g0005 1063 Gene3D - 900 1029 - -
Cam06g0005 1063 CDD REC_hyHK_CKI1_RcsC-like 909 1026 - -
Cam06g0005 1063 ProSiteProfiles CHASE domain profile. 169 395 IPR006189 -
Cam06g0005 1063 Gene3D - 120 172 - -
Cam06g0005 1063 SUPERFAMILY CheY-like 756 883 IPR011006 -
Cam06g0005 1063 CDD HATPase_EvgS-ArcB-TorS-like 573 730 - -
Cam06g0005 1063 SMART HKATPase_4 568 732 IPR003594 -
Cam06g0005 1063 PANTHER TWO-COMPONENT HISTIDINE KINASE 95 1026 IPR050956 -
Cam06g0005 1063 Gene3D - 425 519 - -
Cam06g0005 1063 SMART REC_2 907 1033 IPR001789 GO:0000160(InterPro)
Cam06g0005 1063 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 442 522 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cam06g0005 1063 SUPERFAMILY CheY-like 906 1026 IPR011006 -
Cam06g0005 1063 Gene3D CHASE domain 173 402 IPR042240 -
Cam06g0005 1063 FunFam Histidine kinase 4 173 402 - -
Cam06g0005 1063 Pfam Response regulator receiver domain 909 979 IPR001789 GO:0000160(InterPro)
Cam06g0005 1063 PRINTS Bacterial sensor protein C-terminal signature 675 685 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam06g0005 1063 PRINTS Bacterial sensor protein C-terminal signature 657 671 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cam06g0005 1063 PRINTS Bacterial sensor protein C-terminal signature 692 710 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0887 Cam-Chr2:12113436 Cam06g0005 Cam-Chr6:1856743 6.50E-295 dispersed
Cam06g0005 Cam-Chr6:1856743 Cam11g0114 Cam-Chr11:2783103 3.60E-278 dispersed
Cam06g0005 Cam-Chr6:1856743 Cam02g0287 Cam-Chr2:3642023 3.10E-306 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52063 PF03924 CHASE 2.70E-37 CL0165 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0005 K14489 - csv:101216313 1850.1