Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0007 ATGAGATTTCTGTTGCAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACAATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAAGACAGCCGTTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGGACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCCATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCGGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCAACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGCAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCGCGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTTACCCCTAGTGATTATAATTGAAGACGAACTACTCATTATGTGCCACGTGGATGTTGCTGCTACCTGTCACCCTCACAGCTGCGGTTACCCATGGCGGCCATACTTCTGA 2574 43.08 MRFLLQGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNNRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSKTAVLESQDRHSLLWNEKENPSSPSTVDNGQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNSNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRRDLAGCSLSKKEQGVIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDLPLVIIIEDELLIMCHVDVAATCHPHSCGYPWRPYF 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1867352 1875169 - CaPI482276_06g000070.1 Cam06g0007 128307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0007 857 ProSiteProfiles IQ motif profile. 668 697 - -
Cam06g0007 857 ProSiteProfiles Ankyrin repeat region circular profile. 493 519 - -
Cam06g0007 857 SUPERFAMILY E set domains 265 348 IPR014756 -
Cam06g0007 857 ProSiteProfiles IQ motif profile. 611 639 - -
Cam06g0007 857 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 73 797 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam06g0007 857 SMART ANK_2a 493 522 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 Pfam Ankyrin repeats (3 copies) 466 552 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 610 632 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 690 712 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 667 689 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 FunFam Calmodulin-binding transcription activator 2 667 715 - -
Cam06g0007 857 Pfam IQ calmodulin-binding motif 670 688 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 Pfam IQ calmodulin-binding motif 693 712 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 ProSiteProfiles IQ motif profile. 691 715 - -
Cam06g0007 857 Gene3D - 668 715 - -
Cam06g0007 857 SUPERFAMILY Ankyrin repeat 463 554 IPR036770 -
Cam06g0007 857 Pfam IPT/TIG domain 265 338 IPR002909 -
Cam06g0007 857 MobiDBLite consensus disorder prediction 1 54 - -
Cam06g0007 857 Gene3D Immunoglobulins 259 352 IPR013783 -
Cam06g0007 857 MobiDBLite consensus disorder prediction 8 54 - -
Cam06g0007 857 CDD IPT 265 349 - -
Cam06g0007 857 Gene3D - 424 555 IPR036770 -
Cam06g0007 857 ProSiteProfiles Ankyrin repeat profile. 493 525 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 719 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0007 K21596 - - csv:101222798 1390.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0007 Cam-Chr6:1867352 Cam10g0871 Cam-Chr10:19560520 5.30E-107 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43