Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0007 ATGAGATTTCTGTTGCAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACAATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAAGACAGCCGTTCTTGAGTCTCAAGACAGACATTCTCTTCTATGGAATGAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGGACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCCATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCGGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTTGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCAACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTAGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTACTAGTTGGCAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCGCGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCGTTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACCCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTTACCCCTAGTGATTATAATTGAAGACGAACTACTCATTATGTGCCACGTGGATGTTGCTGCTACCTGTCACCCTCACAGCTGCGGTTACCCATGGCGGCCATACTTCTGA 2574 43.08 MRFLLQGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNNRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSKTAVLESQDRHSLLWNEKENPSSPSTVDNGQCNWLYSRGKTFPMLGGCTSTEYSSPLDNHDVNSNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRRDLAGCSLSKKEQGVIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELPKGSAEVEAEMTVNCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNPAALTSLADVSGMEDLPLVIIIEDELLIMCHVDVAATCHPHSCGYPWRPYF 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1867352 1875169 - CaPI482276_06g000070.1 Cam06g0007 128307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0007 857 ProSiteProfiles IQ motif profile. 668 697 - -
Cam06g0007 857 ProSiteProfiles Ankyrin repeat region circular profile. 493 519 - -
Cam06g0007 857 SUPERFAMILY E set domains 265 348 IPR014756 -
Cam06g0007 857 ProSiteProfiles IQ motif profile. 611 639 - -
Cam06g0007 857 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 73 797 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam06g0007 857 SMART ANK_2a 493 522 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 Pfam Ankyrin repeats (3 copies) 466 552 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 610 632 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 690 712 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 SMART iq_5 667 689 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 FunFam Calmodulin-binding transcription activator 2 667 715 - -
Cam06g0007 857 Pfam IQ calmodulin-binding motif 670 688 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 Pfam IQ calmodulin-binding motif 693 712 IPR000048 GO:0005515(InterPro)
Cam06g0007 857 ProSiteProfiles IQ motif profile. 691 715 - -
Cam06g0007 857 Gene3D - 668 715 - -
Cam06g0007 857 SUPERFAMILY Ankyrin repeat 463 554 IPR036770 -
Cam06g0007 857 Pfam IPT/TIG domain 265 338 IPR002909 -
Cam06g0007 857 MobiDBLite consensus disorder prediction 1 54 - -
Cam06g0007 857 Gene3D Immunoglobulins 259 352 IPR013783 -
Cam06g0007 857 MobiDBLite consensus disorder prediction 8 54 - -
Cam06g0007 857 CDD IPT 265 349 - -
Cam06g0007 857 Gene3D - 424 555 IPR036770 -
Cam06g0007 857 ProSiteProfiles Ankyrin repeat profile. 493 525 IPR002110 GO:0005515(InterPro)
Cam06g0007 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 719 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0007 Cam-Chr6:1867352 Cam10g0871 Cam-Chr10:19560520 5.30E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0007 K21596 - csv:101222798 1390.94