Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cam06g0008 | ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGCTCTGGAGTTAGGGATCTCATGGACAACACCCCACTTTGATCAAGTGTCCAGCTGTTATAGTGTCCTCCCTAGCCAAGAGCCTGATGGCCCCTAA | 486 | 44.03 | MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEALELGISWTTPHFDQVSSCYSVLPSQEPDGP | 161 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1880328 | 1886225 | - | CaPI482276_06g000080.1 | Cam06g0008 | 128308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cam06g0008 | 161 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 8 | 134 | IPR005559 | GO:0003677(InterPro) | |
| Cam06g0008 | 161 | Pfam | CG-1 domain | 14 | 127 | IPR005559 | GO:0003677(InterPro) | |
| Cam06g0008 | 161 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 6 | 132 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
| Cam06g0008 | 161 | SMART | CG_1_2 | 11 | 129 | IPR005559 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cam06g0008 | Cam-Chr6:1880328 | Cam09g1648 | Cam-Chr9:28137002 | 8.60E-43 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cam06g0008 | K21596 | - | csv:101222798 | 271.166 |