Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0008 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGCTCTGGAGTTAGGGATCTCATGGACAACACCCCACTTTGATCAAGTGTCCAGCTGTTATAGTGTCCTCCCTAGCCAAGAGCCTGATGGCCCCTAA 486 44.03 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEALELGISWTTPHFDQVSSCYSVLPSQEPDGP 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1880328 1886225 - CaPI482276_06g000080.1 Cam06g0008 128308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0008 161 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cam06g0008 161 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cam06g0008 161 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 132 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam06g0008 161 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0008 K21596 - - csv:101222798 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0008 Cam-Chr6:1880328 Cam09g1648 Cam-Chr9:28137002 8.60E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam09g1648 . 1 1101 CAMTA Transcription Factor Family AT5G64220 54.0 1.7e-277 952.6
Cam10g0872 . 95 231 CAMTA Transcription Factor Family AT5G64220 73.2 8.3e-54 209.5
Cam06g0008 . 7 128 CAMTA Transcription Factor Family AT5G64220 61.5 1.5e-42 172.2
Cam10g0871 . 32 659 CAMTA Transcription Factor Family AT2G22300 53.4 9.8e-174 607.8
Cam06g0007 . 30 800 CAMTA Transcription Factor Family AT1G67310 50.5 8.0e-195 677.9
Cam06g0008 . 6 133 CAMTA Transcription Factor Family AT1G67310 74.2 1.8e-53 208.4
Cam06g0464 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.8 6.8e-193 671.4
Cam06g0464 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015537 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 0 0 7