Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0016 ATGTATTGGAAACTCAGAGGCATTGGTAATATGGATGAAAGGTCTACGGATGACATGAAAGGAACTAGAGTTGCTTTGATGGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTGCCATTCGGCAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAACACGCCTCTTTGCAGTGGCAACTCACAGTTCGACTTTACTGACAGAAGAAAAAGTATGTTGCCTGGGTCGTTGGCTTTTGATTACAAAGAAAAACAACTTGCAATCTCTTGCATTCCCATAGGACTGTTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGTAGGGAATGTTCAGAAAGTGCTCGGAAACGGATCAAATCGGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCTATGAGCCAATCCAACCTCATCCCCCCAGCCAATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATCCGGTGCTACTCAACGTTCCAGGACGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.2 MYWKLRGIGNMDERSTDDMKGTRVALMESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPENNTPLCSGNSQFDFTDRRKSMLPGSLAFDYKEKQLAISCIPIGLFPKSSDTQPFLNVGSSNVGNVQKVLGNGSNRFFNSDCALSLLSTPVEPGEINLSSMSQSNLIPPANFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2001007 2002909 - CaPI482276_06g000160.1 Cam06g0016 128316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0016 328 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
Cam06g0016 328 Gene3D - 42 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cam06g0016 328 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Cam06g0016 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 297 IPR044817 GO:0003677(InterPro)
Cam06g0016 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Cam06g0016 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1194 Cam-Chr4:26022179 Cam06g0016 Cam-Chr6:2001007 9.40E-33 dispersed
Cam05g1511 Cam-Chr5:18894882 Cam06g0016 Cam-Chr6:2001007 9.00E-37 dispersed
Cam06g0016 Cam-Chr6:2001007 Cam06g1685 Cam-Chr6:28240277 6.00E-35 dispersed
Cam11g1930 Cam-Chr11:31693150 Cam06g0016 Cam-Chr6:2001007 6.50E-30 transposed
Cam03g0384 Cam-Chr3:4920750 Cam06g0016 Cam-Chr6:2001007 1.60E-42 wgd
Cam06g0016 Cam-Chr6:2001007 Cam06g1944 Cam-Chr6:30344152 2.80E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52066 PF03110 SBP 7.40E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0016 - - - 0.0