Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0033 ATGGCGGCTTCTTTTGCTACTACGCCTCTGGTTGGCTTCGTTTCTGCTTACAATACCGTCTCGCAAACCAAAGCTTCAGGCCCGTCTAATTCGGTTAAGCTTCATACGCTTCAATTGCCTTCGAATCTTTCGTCCTCGTCCAGTTTTCTGCCCGCTTCGTTGCGTTTTCCTTCTCTGACAACTTCTTTCAATCCGTTGTCTTCGAGGAATGCTGTTCGTAGCTCCGTCCGAGCTAGTGCTGAGGTACCTCCTCTACAAGCCAAAGTAACAAACAAGGTATATTTCGATGTGAGCATTGGTAATCCAGTAGGGAAACTTGCTGGGAGGATTGTGATTGGATTATTTGGGGATGATGTCCCCAAAACGGCAGAGAACTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGCCTTTCATCGTGTAATCAGAGATTTCATGATACAAGGGGGTGACTTTGACAAGGGAAATGGAACTGGGGGTAAAAGCATATATGGTCGTACATTTAAAGATGAAAACTTCAAATTGAGTCATACTGGACCAGGAGTTGTCAGCATGGCAAATGCAGGTCCAAATACTAATGGAAGTCAATTTTTCATATGCACTGTCAAGACCCCATGGCTGGATAAGAGGCATGTGGTTTTTGGGCAAGTCCTGGAAGGATTCGACATTGTTAAGCTAATTGAGTCTCAAGAAACAGACCGTGGGGACCGACCATTGAAGAAGGTTGTCATCAGCGACTGCGGCGAGCTTCCAGTGGCCTGA 777 46.33 MAASFATTPLVGFVSAYNTVSQTKASGPSNSVKLHTLQLPSNLSSSSSFLPASLRFPSLTTSFNPLSSRNAVRSSVRASAEVPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGSAFHRVIRDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDKRHVVFGQVLEGFDIVKLIESQETDRGDRPLKKVVISDCGELPVA 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2161442 2167232 - CaPI482276_06g000330.1 Cam06g0033 128333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0033 258 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 138 155 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cam06g0033 258 CDD cyclophilin_ABH_like 92 253 - -
Cam06g0033 258 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 105 253 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 Gene3D - 79 258 IPR029000 -
Cam06g0033 258 SUPERFAMILY Cyclophilin-like 83 255 IPR029000 -
Cam06g0033 258 FunFam Peptidyl-prolyl cis-trans isomerase 79 258 - -
Cam06g0033 258 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 90 255 - -
Cam06g0033 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 201 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 214 229 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 155 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 213 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 129 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam06g0033 258 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 104 254 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0033 K03768 - - csv:101218923 430.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0736 Cam-Chr1:8191951 Cam06g0033 Cam-Chr6:2161442 1.50E-68 dispersed
Cam04g1167 Cam-Chr4:25744323 Cam06g0033 Cam-Chr6:2161442 1.70E-10 dispersed
Cam06g0033 Cam-Chr6:2161442 Cam07g0421 Cam-Chr7:5651310 1.00E-58 dispersed
Cam06g0033 Cam-Chr6:2161442 Cam02g2023 Cam-Chr2:33239408 5.60E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33