Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0034 ATGGCCGACGGCAAGTTCGATCTCCCTGACGATCTTCTCTCCTCCCGCCCTTCCGATCACTCCTGGACACCCAAAGTGGAAGCTTCTGGAGGGAATGACGAGGAGAAGGTGCTCTCGGCCTTCCTTGACGAGTCAAAAGACCCAGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGATGGAAGTGCGTGCTCCAACACCAGTGTCCCTTGCTAACTCAATTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCCGAGGACAAGAAAGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGCCGCCGTTGGCGAGAGGAAGAGCGAGAAACTGGCTTACTTGGTGGTCGCCGCAGGAAAACTGAGCGCCGCATTGATAACATGTCAACTAAAGAGGCAATGGAGAGTAGAGTTCTGCCTAATTCGGATAGATGGCATGATGGTCGCACTTCTGGGCATGATGGTCGCACTTCTGGTCATGACGGTCGTACTTCTGGACATGATGGCCGTACTTCTGGGCATGATAGTCGTACTTCTAGTCATGATGCACGACGTGACAACAAATGGACGTTGAGATGGGGACCAGATGACAAAGAAAAGGAATCACGGATGGACAAGCGTTCAGATGCTGATAAGGAAGATGTTCGCAATGACAGTCAATCAGTGAGTGGCAATCGCCCTACTTCTGAGCGTGATTCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTGGGCTCAACTTCCTCTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTAGGATTTACAATTGGAAGAGGAAGGGCAAATACTATTGGGAGATCGTCTACTGGTCTCATTGGAGTTCCACACTTGGATAAGATTGAAAATGTTCCTGGGAAACCAAGATACTCATCTCATGCTTTTTGTTACCCCAGGGGTAAGCTTCTTGACATATATAGGAGGCAGAAATCTAATCCATCATTCTCAGCTCTGCCTGATGATATGGAAGAATTGCAGCCTGTGACTCAACCTTGTGTTGTAGAACCATTAGCTTTTGTTTCTCCGGATGCTGAAGAGGAGACTACCCTTAGTGACATATGGAAGGGGAAAATCACCAGTAGCGGGGTTGTTTACAATTCACATAAGAAGGGGAAGCTAGCTGAATGTGTTTTAGGAGATGTAGACTCCATAGATGGATATCAGACTGGGCTGGATTCAACTTTAGAGTCTGAGAATATAGCAGCAACTCCGGTTGAAGATATTGCTCATGTGACTCATGAAGTTACTAATGATGAAGCATGCCAAGATGCTAGTGACAGGAGCATTTGGAGTCATCCTTCAATGAGAGATGTCCTAGATGGAAAATATGTCAGCCATAATAAGGAAGATGATAAAAGGTCTAGTGCCATTTCTACGTCAAACTCTGGTGGATTGGCCCACACAGTTTCTACAGTAGCCTCCCAACGTGGGATGGAGATTGGTGGTGGACACCCTGGTACTCAGCTAAATGTTGGTGTCAATGGGCGAGCAGATTCTGATCATAAAAAGCCTCATAACTTTGATGAAAATGAGTTTGCCAATTCGTTTGATGCCAGATCCAAGCTTTCTGATGATCCTAGCTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGATGTGAAATCTGAGGAGATGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCTTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTGGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTTTGTGAGTTGGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATACGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAATTTACCTTCTAAGCATCCAGCTCTTGATGCGAATGATGCATCCACAACAAATGAGGTTCATCGGTCACTTGCTGAGTTACATAGCCTCTCCAATCAACACATTTCATCTGGAATGTCTGAGACTGAAGCACCATTTCAATTGCATTCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGCTACCAATTTCCAAACTCTTCTGGGGTACTGCCAATGGTGAATTCTATCAGCCAACCTTCTCTTTTGCATGAGTTAACTGACCGCAGTGTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATATGAAACCAATTGAAGTTACAAATTCAAAACATACCAAGTCAGCTAACATGCCTTCAAGCATGGTGAGAACCGCACCATTAGTTGGGAAGCCGGAAGCATCTCTTAATGCAGAGACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGAGCATATACCAGGATGCGAGTGTTGCTCATTCGTTGCCACATATAGAACAGGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCACATCAATATCATCAGGCACTTCAACAGCGGAATTTGTTGTCTCACTCTAATGAAGCTACTTTAGATCATCATATGCAACAGCAGAATCTTATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTTGATCATTTCTTGAACTTGCAGATGCAACAGCAACAGCAACGTCAGCTGCAGTTACAGCATCAATTACAACAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAGTCTCAAGTCCAGCAGGTACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCAGGCCTTGGGCAGACACATATTGATCCAATTAGAGCCAATAATGCTCTTGATCAGGTGATGATGGAGCAGCGTCTTTTACATGAGCTACAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAGCTTTTCAAAGCGAAGTTTGGTCACTTGCCACCACACCAAGAACAAAGAGATTTGTCTGAATTAATATCTCGGGCTCAGCATGGACAGATACAATCATTGGATCATCAACTTCTCCAGCAGGAGATGCTACAGTCGAGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAATATGGAGGACAAGAGACATGTTGGTGGTCCTATCTGGCCAGAGGATGAGGCTGATCAGCAGTTTTTCAGAGGACATGCTGGCACACAACGCTTACCGACTTCAGGGTTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGCTGAATCACCTTGAGCGCAATCTTTCCTTTCAAGATCGGTTTAGACTAGGTCTTTATGAGCCTGCTTCACTTCCACTCGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCTATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCTAATGCACATAATCCACCTGGTGGTCAACTGGGGCAATATGCAACCGGTACCATTCCACAGAATCATCATCACTCTCTAGTCGGTAACCAGTTTCACGTTTCACATTTTGATGGAACTGAAGGCAGCTGGTCTGAGAAAAATGAGCGACTTGGAAATGATTGGATGGAGTCTCGCATTCAACAACTGCATATAAATGCTGAGCAACAGAAAAGGGAGTTGGAAGCTAAAATGATTTCCGAGGATCCAACTTTATGGATGTCAGATGGGCTGAATGATGAGAAGTCAAAGCAGTTATTAATGGAACTCCTCAATCAGAAATCTGTTCATCAACCTACAGAATCCTTGGATGTAGGAAGTGGAGCATCTTTCAATAGAGCATCATCTGGCCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCATTCTTCATTCAGGCAAGGAAAGAGGTATGAACAACACATTGCCAGTGGGGTCTTATGGTCCTAATTCTTATGAACCACTGCAAGATGAGCATCCTGGCAACTTGACCAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTCTCTGTTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCGGTTAACAGCTCTAGTTCTGGCATGGCTGGCAACCTTTCTATGAATAGAGATGTCTTAGAGGTGGAGGGCAGGGCGCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGATCAAGTGGCATCTGCTGATCGTGGGGAATTTTCAATGGATACTCATACCCTTAGTCGGCATTCGTCTCTTGGTTCTGCTGGCTTTCACAATGAAAAGATTGCCAATACGTTTCCTGAAGAGGTTGCTAAAGACCAGGTGACTATTCACAATAAAGATAACACTTTGTTGAAACGCCCTCCCGTTTCACGCACTTCGGCATCCCAGGATGGTTTGTCTGTCCTGATTCCAGATCCGGTTGTCAGAGGGAAGAATTCAGATGGTGGAAGACCGGACCCGACTGGTATCTTGGTGAACCAAGAAAATATGGCAGCCATGAAGAAAGAGATGCGTTTCCGTCGCTCTTCTTCTTGTAGTGACAGCGACGTGTCGGAGACTTCTTTTATTGATATGCTGAAGAAGACAGCTCCACAAGAAGCCCATTTGACGACGGCAGGAGTTTCGGAGCCATCTGCTGATGGAATGCAGGGAGGGAAAGGTGGGAAGAAGAAAGGGAAGAAGGGGAGACAGATAGATCCCGCTCTACTCGGTTTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATTCAACGCTTAGATGATTAG 4914 45.44 MADGKFDLPDDLLSSRPSDHSWTPKVEASGGNDEEKVLSAFLDESKDPVASENSIPLSPQWLYAKPSETKMEVRAPTPVSLANSIDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLGGRRRKTERRIDNMSTKEAMESRVLPNSDRWHDGRTSGHDGRTSGHDGRTSGHDGRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRNDSQSVSGNRPTSERDSESRDKWRPRHRMESHSVGSTSSRAAPGFSLERGRGDGGSNLGFTIGRGRANTIGRSSTGLIGVPHLDKIENVPGKPRYSSHAFCYPRGKLLDIYRRQKSNPSFSALPDDMEELQPVTQPCVVEPLAFVSPDAEEETTLSDIWKGKITSSGVVYNSHKKGKLAECVLGDVDSIDGYQTGLDSTLESENIAATPVEDIAHVTHEVTNDEACQDASDRSIWSHPSMRDVLDGKYVSHNKEDDKRSSAISTSNSGGLAHTVSTVASQRGMEIGGGHPGTQLNVGVNGRADSDHKKPHNFDENEFANSFDARSKLSDDPSSIFFIPFSEQNPNKSSDVKSEEMSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADTKSLSGQSGASGGIMETNLPSKHPALDANDASTTNEVHRSLAELHSLSNQHISSGMSETEAPFQLHSKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSSGVLPMVNSISQPSLLHELTDRSVPVQNENKLHPFGLLWSELEGTNMKPIEVTNSKHTKSANMPSSMVRTAPLVGKPEASLNAETWLDVYRRSMHSDQSIYQDASVAHSLPHIEQESNRFDLADQLMSHQYHQALQQRNLLSHSNEATLDHHMQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQVLLEQLLRRQMHDSGLGQTHIDPIRANNALDQVMMEQRLLHELQQQSHHQQRSVDPSFEQLFKAKFGHLPPHQEQRDLSELISRAQHGQIQSLDHQLLQQEMLQSRQLSMALRQRANMEDKRHVGGPIWPEDEADQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESNAHNPPGGQLGQYATGTIPQNHHHSLVGNQFHVSHFDGTEGSWSEKNERLGNDWMESRIQQLHINAEQQKRELEAKMISEDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDVGSGASFNRASSGLYSGSGSLEQSFILHSGKERGMNNTLPVGSYGPNSYEPLQDEHPGNLTSNEKVPYRSDSVSVVKGASILAGLKANGAVNSSSSGMAGNLSMNRDVLEVEGRARGLKGEGLMKTQAFQIQESMLDQVASADRGEFSMDTHTLSRHSSLGSAGFHNEKIANTFPEEVAKDQVTIHNKDNTLLKRPPVSRTSASQDGLSVLIPDPVVRGKNSDGGRPDPTGILVNQENMAAMKKEMRFRRSSSCSDSDVSETSFIDMLKKTAPQEAHLTTAGVSEPSADGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2168636 2177206 - CaPI482276_06g000340.1 Cam06g0034 128334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0034 1637 Coils Coil 991 1011 - -
Cam06g0034 1637 SUPERFAMILY GYF domain 579 639 IPR035445 -
Cam06g0034 1637 Gene3D - 570 653 IPR035445 -
Cam06g0034 1637 ProSiteProfiles GYF domain profile. 583 633 IPR003169 GO:0005515(InterPro)
Cam06g0034 1637 MobiDBLite consensus disorder prediction 92 232 - -
Cam06g0034 1637 MobiDBLite consensus disorder prediction 242 262 - -
Cam06g0034 1637 MobiDBLite consensus disorder prediction 1519 1538 - -
Cam06g0034 1637 MobiDBLite consensus disorder prediction 1585 1614 - -
Cam06g0034 1637 MobiDBLite consensus disorder prediction 1 34 - -
Cam06g0034 1637 Coils Coil 1242 1266 - -
Cam06g0034 1637 Pfam GYF domain 587 624 IPR003169 GO:0005515(InterPro)
Cam06g0034 1637 MobiDBLite consensus disorder prediction 70 286 - -
Cam06g0034 1637 CDD GYF 583 640 IPR003169 GO:0005515(InterPro)
Cam06g0034 1637 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1637 - -
Cam06g0034 1637 SMART gyf_5 584 638 IPR003169 GO:0005515(InterPro)
Cam06g0034 1637 Coils Coil 927 949 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0034 K18730 - - csv:101204211 2778.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1304 . . . . Bpe13g00818 . . . . . . . . . . . . . . . . . . . Cla06g00177 Cam06g0034 Cec06g0196 Cco06g0191 Clacu06g0193 Cmu06g0187 Cre06g0959 . . . . . . . . Blo02g00198 . . . Bpe14g00803 . . . . . . . . . . . . Bhi12g02418 . . . Hepe03g1143 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44