Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam06g0040 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAATTGAATCCTGAAAGGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCGAACATTGCCAAATTGCCTTCTGGAATAGACAAGCTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGAAGGATACGCCTCTTGTCAACATTTCTGCTCAAACTTTCACTTTCCGGGAGCTTGCAATTGCGACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGGCGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCAGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGGTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAGGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTGACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATCGATAGCACCCGACCCCAAGGGGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCGAAATTGGCTGATCCACAGTTGCAGGGGCGATATCCCATGCGAGGGCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTTACCGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGACCGGGATGAAAGACGGAACAGAGAGGAGAAAGGTGGAGGGGTGGTAAAGAACGAAGAAGGGGGAGCATCTGGACGAAGGTGGCCATTGGACGGTCCCGAGAAGGACGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCAGTTGCTGAGGCCAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATGA | 1404 | 47.29 | MGCFPCFDSREEEKLNPERESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDTPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAQRGSGDRDERRNREEKGGGVVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2224802 | 2229835 | + | CaPI482276_06g000400.1 | Cam06g0040 | 128340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam06g0040 | 467 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524(InterPro) | |
Cam06g0040 | 467 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g0040 | 467 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 359 | IPR011009 | - | |
Cam06g0040 | 467 | MobiDBLite | consensus disorder prediction | 366 | 467 | - | - | |
Cam06g0040 | 467 | Pfam | Protein kinase domain | 90 | 293 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam06g0040 | 467 | Gene3D | Phosphorylase Kinase; domain 1 | 47 | 161 | - | - | |
Cam06g0040 | 467 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 375 | - | - | |
Cam06g0040 | 467 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Cam06g0040 | 467 | MobiDBLite | consensus disorder prediction | 413 | 458 | - | - | |
Cam06g0040 | 467 | FunFam | Serine/threonine-protein kinase PBS1 | 58 | 161 | - | - | |
Cam06g0040 | 467 | CDD | STKc_IRAK | 91 | 359 | - | - | |
Cam06g0040 | 467 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cam06g0040 | 467 | FunFam | Serine/threonine-protein kinase PBS1 | 162 | 377 | - | - | |
Cam06g0040 | 467 | MobiDBLite | consensus disorder prediction | 382 | 400 | - | - | |
Cam06g0040 | 467 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cam06g0040 | 467 | PANTHER | OS07G0668900 PROTEIN | 45 | 379 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1137 | Cam-Chr3:22139614 | Cam06g0040 | Cam-Chr6:2224802 | 7.10E-121 | dispersed | |
Cam03g1572 | Cam-Chr3:30707699 | Cam06g0040 | Cam-Chr6:2224802 | 9.40E-88 | dispersed | |
Cam06g0040 | Cam-Chr6:2224802 | Cam10g2032 | Cam-Chr10:34163794 | 9.20E-146 | dispersed | |
Cam06g0040 | Cam-Chr6:2224802 | Cam05g0685 | Cam-Chr5:5961838 | 5.50E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85229 | PF00069 | Pkinase | 1.90E-45 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam06g0040 | K13430 | - | csv:101219880 | 917.146 |