Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0047 ATGGCCAGTTTCAAAGATTTAGTTTTCTTCCTCTCATTTGCTTCATTCATTGCTGCAGTCGTCTCTAACTCAGAAGGGGATGCTCTTGCTGCATGGAAAGCTCAACTGCTTGATCCAAACAATGTCCTTCAAAGTTGGGACCCCACTCTTGTAAATCCATGCACTTGGTTCCACATCACTTGTGACAGTGATAACACTGTCGTCAGGGTGGATCTTGGCAATGCGAATCTCTCCGGACCCCTGATTCCCGAACTCGCCAAGTTACCAAATCTTCAATATTTGATGGTGTATGACAATAATTTGAGTGGTTCAATTCCAAGGGAGATAGGGTTATTAACAAATCTGAAAAGTTTGTTTCTTTACAATAACAACTTCACTGGGCCTTTACCACCTTCTTTGGGAAATTTGAGCTCTTTGTTATTCTTCGAAGCACAAGGCAACAGTTTTAGTGGAATGATTCCAGCATCATTTGGGGCCTTGACATCTTTGAAGACCTTGAGATTAGATAATAACAATCTTAGTGGCATCATCCCTTTCACTCTTCTACAACTGGTTGACTTTGCCAATCTTCAGCTTCTGAATGTTTCACTAAACTCGTTTACCGGGACGGTTCGCCCGACTAATTCATCAGAGATGGCAGTGACTACAATAATACAAGACCCAAAAGCTCAAATTTAA 678 41.45 MASFKDLVFFLSFASFIAAVVSNSEGDALAAWKAQLLDPNNVLQSWDPTLVNPCTWFHITCDSDNTVVRVDLGNANLSGPLIPELAKLPNLQYLMVYDNNLSGSIPREIGLLTNLKSLFLYNNNFTGPLPPSLGNLSSLLFFEAQGNSFSGMIPASFGALTSLKTLRLDNNNLSGIIPFTLLQLVDFANLQLLNVSLNSFTGTVRPTNSSEMAVTTIIQDPKAQI 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2325378 2328043 - CaPI482276_06g000470.1 Cam06g0047 128347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0047 225 ProSiteProfiles Leucine-rich repeat profile. 162 183 IPR001611 GO:0005515(InterPro)
Cam06g0047 225 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 200 - -
Cam06g0047 225 FunFam Somatic embryogenesis receptor kinase 1 21 187 - -
Cam06g0047 225 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Cam06g0047 225 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515(InterPro)
Cam06g0047 225 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Cam06g0047 225 Pfam Leucine Rich Repeat 90 110 IPR001611 GO:0005515(InterPro)
Cam06g0047 225 SUPERFAMILY L domain-like 22 203 - -
Cam06g0047 225 SMART LRR_typ_2 88 111 IPR003591 -
Cam06g0047 225 SMART LRR_typ_2 160 183 IPR003591 -
Cam06g0047 225 SMART LRR_typ_2 112 136 IPR003591 -
Cam06g0047 225 Gene3D Ribonuclease Inhibitor 21 188 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0047 K13418 - - csv:101204454 372.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0047 Cam-Chr6:2325378 Cam10g0891 Cam-Chr10:20022795 1.80E-30 dispersed
Cam06g0046 Cam-Chr6:2316297 Cam06g0047 Cam-Chr6:2325378 1.10E-27 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1324 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00166 Cam06g0047 Cec06g0186 Cco06g0179 Clacu06g0181 Cmu06g0176 Cre06g0949 . . . . . . . Cme11g02356 . . . . . . . . Sed12g1621 . . . . . . . . Bhi12g02401 Tan06g1456 Cmetu11g1073 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000502 6 3 2 2 3 3 3 3 3 2 2 3 4 3 4 6 3 4 4 3 4 3 2 3 5 4 3 5 8 6 109