Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0060 ATGGCAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGCGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGAACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTGAGATTTAAAGGAACCAAAGCCAAGCTTAATTTCCCTGAACGAGTTCAAGCCAATCCTTCTGACTTTGGCTTTCTTCCCTCCGCCGCCTCCACCGCTGCTTCTTCTGCTGCTCCACCTCCCCAAGCCGCCGTGGCTTCATTTTCATCTCCTTCTCTTTCTCTTCCGCCGCCGTTGTCGGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAAACCCATTACCCTTTTTCTTCTTCTTCTTCTACACAACCACACCAACAAGATCAGGATCACTACGGCAAAGATTTCGGCACCGGTGGCTCAACCAATTAG 549 49.54 MAETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPSDFGFLPSAASTAASSAAPPPQAAVASFSSPSLSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQTHYPFSSSSSTQPHQQDQDHYGKDFGTGGSTN 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2471612 2472160 + CaPI482276_06g000600.1 Cam06g0060 128360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0060 182 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 MobiDBLite consensus disorder prediction 85 106 - -
Cam06g0060 182 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677(InterPro)
Cam06g0060 182 SMART rav1_2 11 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 FunFam Ethylene-responsive transcription factor 2 10 69 - -
Cam06g0060 182 Pfam AP2 domain 11 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 PANTHER DNA-BINDING DOMAIN 7 156 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam06g0060 182 MobiDBLite consensus disorder prediction 151 182 - -
Cam06g0060 182 MobiDBLite consensus disorder prediction 151 166 - -
Cam06g0060 182 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam06g0060 182 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0060 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1620 Cam-Chr1:29779819 Cam06g0060 Cam-Chr6:2471612 4.00E-26 dispersed
Cam06g0060 Cam-Chr6:2471612 Cam08g1150 Cam-Chr8:17847150 6.80E-28 dispersed
Cam05g0492 Cam-Chr5:4340406 Cam06g0060 Cam-Chr6:2471612 2.10E-15 wgd
Cam06g0060 Cam-Chr6:2471612 Cam06g1985 Cam-Chr6:30592795 1.10E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1351 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00156 Cam06g0060 Cec06g0172 Cco06g0167 Clacu06g0166 Cmu06g0162 Cre06g0938 . . . . . . Chy11g01833 Cme11g02369 Blo02g00209 . . . Bpe14g00816 . . . Sed09g0340 . . . . . . . . Bhi12g02385 Tan06g1437 Cmetu11g1306 . Hepe03g1176 . . . . . . . . . Lsi09g01770 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52071 PF00847 AP2 5.40E-14 CL0081 Cam TF