Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0065 ATGACGCAGCCACAGCTCCCCATCAGCATTAGTAGAAACTATAATGCTCAGTTGGTGATTGAGGTGCAGGAAAATCTCAATAAACTGGGGGAATCAGTGGTTGCTACGGACGAGTATGGATCATTAGGACAAATCATCAAACCTTCGATCTACAGAATACCAACATTCATGAGAGAAGTTCATCCGAAAGCGTTCGAGCCACAGTTGGTGTCGTTTGGGCCATACCACCATGGGAATCCACAATATGCTTCAATGGAACTGGAAAAACAGAAAGCGTTTCGCCGTTTGAAAACCGAGTACCCAGAGATGTTAGAGTCGATTGTGAAGACTGTGTCTGACAATTTGGAAAATCTGTTGGGAGCATACGATAAGCTAATTGAGGGTGAATGGACGAAACGTCCTGCCAAGTTCTTGGAGGTGTTGATTGTGGATGGCTGTTTCATGCTAAGTTTCCTCAAGAAATGTCCCCCCTCCCTAAGTTCTATGTGTTGGGATATAAAGCGGGACATGCTTCTGCTTGAGAATCAGCTACCCATGCAGCTTCTTGACGATTTGTATTCCATTTTACCAAACATGGAGGATGGAAGACTGGCATGGTTTATATGCAAGTCAATGTGCTTCGAATCAGGGGAAGCAGTATCAATGGGAGGAGACTTGCACATTTTGGATATGTATAGAATGTCACTATTGGGTACTACGATATTAGAGAATAAGGATGGTAGTATGGAGAGAAAAACGAAGAAATCCGGGCCAGAATATCAAGTGATTCGACATGCAACACAGCTTCGTGACGCGGGGATAGATTTCCAGAAAAGCGGTACAAAGAGCCTTACTGACGTGAGTTTTGACTCCAAAAAAGGGGTGCTGAAAATTCCACAATTAGTGGTGGACGATGATAGTGAAGCCAGTTTATTAAATGTGATGGCATTTGAGAAACTACATGAGGAGGCTGGAAGCGAAGTCACATCTTTCGTAGTATTGATGAACAATTTGATAGACGTGGATGAAGATGTGGCTTTGCTGTCTTCTAAAAATATAATAGCTAACGCGCTTGGGGATGATCAAAGTGCGGCGGAGTTGTTTGGTTCGCTTGGGAAAGGGGCGGCTATGGATTTGGAAAGCCACATTACAGAGGTGCATCACCAGGTGAATCTGCATTGCCGCCGGCCATGGAATGAATGGTGTGCAAGTCTCAAACATAATTACTTTCATAACCCATGGGCCATTATCTCACTCGTTGCCGCTATTCTCGGTTTCGCCATCATTATTGTTCAAGCCGTCTACCAAATTGTCTCGATATTAAGAGCCGCACACGATGTGATTCTCATTCTCATATCACTGTTTCTTGTTGTCCCTCCCGAGCATAATCGGTGCCCCCCTCCTCAAATTGCTTACCAACTTCAACTTCCCAACTGCGATCTTCAATCTCTCTCAGGTCTCTCTCTTCCGGCAGCGACTATCGAATTTTACCCGAGATTTCGAACTAATCGAATTCAAGGGGAAAAGAGACTACCTACCCATCTTTGGAATTTCCAAGTCCTTAAGAGCAAATACATGGGGCGTTCCCTAGTTGCTGGCCTCTGTTTATGGTTCTCTCTGACATTGGTGATTGCAGATGCTAATGACTCTTCTTTGGGGGGTTTAGTCTGGTCTTCTGCAAAAGAAGAGGGCGATCTCCTTATTGAGCACAGGCCCCAGGAAGATTCCGCCGCCGCCACACCTGTCGTTCACGATGCCGATGGCTTTGATGGCGGCTTTTCTTCCCTCGATAGCATGTTACAGTGGGCTATAGGCCATTCTGATCCTGCAAAACTGAAGGATACTGCACAGGATGTGAAACGATTGTCTCCAAGTGAGATAAAGAAGCGTCAAGAAGAAATTAAGGACCTAATAGAGGAGTTGAAGGTGCCATCAGATGCAAAGCTGATGCAAATTGCGATAGATGACTTGAAAAATTCCTCTCTATCATTGGAAGATCGCCATCGGGCATTACAGGAGCTTTTAGTACTCGTTGAGCCAATAGACAATGCAAATGATTTGGACAAACTTGGGGGCCTTGCTGTGCTTATTCATGAGCTTAATCATTTCGATCCTGATATTAGGAAAGTTGCAGCGTGGATTCTCGGAAAAGCAAGTCAGAATAACCCTATTGTTCAAAAGCAGGTATTGGAACTCGGGGCACTAGCAAAATTAGTAACGATGGTAAAATCTGATTTTGTAGAAGAAGCCATCAAGGCATTGTATGCTATTTCATCGTTGGTTCAAAATAATTTATCTGGCCAGGAATTATTCTATGCCGAAGCTGGAGAAACTATGCTTCAGGATATTTTAAGCAACTCGAGCATGGATATCAGATTGCAAAAGAAAGCTGTTTTTCTTGCAAGTGATTTGGCTGTGACACAACTAGAAAAAACAGATGAAGCTGAAAGGCCATTTTTTGGAGATCGCCTTTTCTTGAAGTCTGTGGTTGATCTCATCCATTCCACAGACATTGATCTCCAGGAGAAGGCCCTCATTGCTCTAAAGAACCTCCTGCTTTTGAGAACAACGAAAGCTCAAGTTTTAAGAGAATTTTGTGGGTTGGATGTTGCTTTGGAGAGGATGAGGGTGAAGCTGGAGGTATTAAAGGAAGGGGAAGATCACCGAGATTATGCAATGGATGTGGAAGATCTACGAAGCCAAGTGGAGTTACTTTTCCTTGAAAAGCTGGGAAAGAGAATGCAGGTTTCAACATGA 2736 43.9 MTQPQLPISISRNYNAQLVIEVQENLNKLGESVVATDEYGSLGQIIKPSIYRIPTFMREVHPKAFEPQLVSFGPYHHGNPQYASMELEKQKAFRRLKTEYPEMLESIVKTVSDNLENLLGAYDKLIEGEWTKRPAKFLEVLIVDGCFMLSFLKKCPPSLSSMCWDIKRDMLLLENQLPMQLLDDLYSILPNMEDGRLAWFICKSMCFESGEAVSMGGDLHILDMYRMSLLGTTILENKDGSMERKTKKSGPEYQVIRHATQLRDAGIDFQKSGTKSLTDVSFDSKKGVLKIPQLVVDDDSEASLLNVMAFEKLHEEAGSEVTSFVVLMNNLIDVDEDVALLSSKNIIANALGDDQSAAELFGSLGKGAAMDLESHITEVHHQVNLHCRRPWNEWCASLKHNYFHNPWAIISLVAAILGFAIIIVQAVYQIVSILRAAHDVILILISLFLVVPPEHNRCPPPQIAYQLQLPNCDLQSLSGLSLPAATIEFYPRFRTNRIQGEKRLPTHLWNFQVLKSKYMGRSLVAGLCLWFSLTLVIADANDSSLGGLVWSSAKEEGDLLIEHRPQEDSAAATPVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPSEIKKRQEEIKDLIEELKVPSDAKLMQIAIDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLIHELNHFDPDIRKVAAWILGKASQNNPIVQKQVLELGALAKLVTMVKSDFVEEAIKALYAISSLVQNNLSGQELFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLAVTQLEKTDEAERPFFGDRLFLKSVVDLIHSTDIDLQEKALIALKNLLLLRTTKAQVLREFCGLDVALERMRVKLEVLKEGEDHRDYAMDVEDLRSQVELLFLEKLGKRMQVST 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2505561 2516946 + CaPI482276_06g000650.1 Cam06g0065 128365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0065 911 Coils Coil 647 667 - -
Cam06g0065 911 Pfam Plant protein of unknown function 50 419 IPR004158 -
Cam06g0065 911 Pfam Nucleotide exchange factor Fes1 589 680 IPR013918 -
Cam06g0065 911 PANTHER BNAC04G53230D PROTEIN 47 434 - -
Cam06g0065 911 SUPERFAMILY ARM repeat 628 859 IPR016024 -
Cam06g0065 911 Gene3D - 622 901 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0065 K09562 - - csv:105434386 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1747 Cam-Chr1:31079261 Cam06g0065 Cam-Chr6:2505561 7.40E-51 dispersed
Cam05g0768 Cam-Chr5:6691722 Cam06g0065 Cam-Chr6:2505561 3.80E-21 dispersed
Cam06g0065 Cam-Chr6:2505561 Cam08g1790 Cam-Chr8:24083083 4.40E-35 dispersed
Cam06g0064 Cam-Chr6:2495667 Cam06g0065 Cam-Chr6:2505561 4.70E-91 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1395 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00149 Cam06g0065 Cec06g0165 Cco06g0159 Clacu06g0160 Cmu06g0157 Cre06g0931 . . . . . . Chy11g01847 . . . . . . . . . Sed09g0354 . . . . . . . . Bhi12g02377 Tan06g1429 Cmetu11g2072 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014136 1 1 0 1 1 1 1 0 0 1 0 0 0 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 1 1 23