Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0079 ATGGCCGGCTTGGTCACTGGTTCCCAACACTATCCCCACGGTGCTGATGAGAGTCTTCGTGGACCTCCACTATCGTCGAAAATATGTCGAGTTTGCAGTGACGAAATAGGACTAAAACAAGATGGGAAAGTATTTGTGGCATGTCTTGTGTGCAATTTCCCTGTTTGTCGACCTTGTTATGAGTATGAAAGGAGCGAAGGCAATAGGTGTTGTCCCCAATGCAACACTCGCTATAAGCGTCACAAAGGCTCACCCAGAGTGATCGGCGACGAGGAAGAAGGTGACGATGCCGATGATTTTGACGATGAGTTCCCCATGAAACACCACAACAATGACGATTTTGAAACAAAGCAGCCTAATCATTCGGAAAACGATAACTACAATGAGCAGAATTGGCATAAAAATGTTCAGAATTCGTTCTCAGTTGCTGGAAGTGTGAATGGGAAGGATATGGAAGGGGAAAAAGAGGGTTATGGAAGTGTAGAATGGAAGGAGAGAATTGATAAGTGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGAAACAAAGAAGATGGAAGTAACAATGATCAAGAAGAAGATGACTACTTATTGGCAGAAGCCCGGCAGCCGCTATGGCGGAAACTTCCAATATCGTCAAGCAAAATCAGTCCATATCGCATCGTCATTGTCCTCCGCCTCATAATTCTTGCATTCTTCTTCCGATTTCGGATCCTTACTCCGGCCTACGACGCCTTCCCCTTGTGGCTGATCTCCGTCATCTGCGAAATTTGGTTCGGCTTCTCCTGGATTCTCGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTAGATCGCCTCTCCATGCGCTTCGAGCGCGACGGCGAGCCCAACCGCCTCTCACCGATCGACTTCTTCGTCAGCACGGTGGACCCTCTGAAAGAGCCGCCGATCATAACCGCCAACACCGTCCTTTCCATCCTCTCGGTCGACTATCCGGTGGAGAAGGTCAGCTGCTACGTATCGGACGATGGAGCGTCGATGCTGCTGTTCGATACGCTGGCGGAGACTGCGGAGTTTGCTCGGAGATGGGTGCCGTTTTGCAAGAAGTTCAGCATCGAACCTAGGGCTCCGGAGTTCTATTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGGCTAGCTTTGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCGAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGACGTGGAAGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAACGCCCTGGATATCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCGTTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATCGTGTTCTTTGATATCAACATGCGAGGGCTAGATGGAATCCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGGCCAAAGATGACATGCGATTGTTGGCCTTCCTGGTGTTGCTGCTGCTGCGGTGGTTCAAGGAAATCAAAATCCAAGAGGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCAAGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGCGCCAGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTCGAAGGTTATGATGAGTTGGAGAAGTCATCACTCATGTCGCAAAAGAATTTCGAGAAAAGATTCGGACAGTCACCAGTTTTCATCGCTTCTACCCTTAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACTTCACTTGTTAAAGAAGCCATCCATGTGATTAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTACGGTTCTGTCACTGAGGATATTTTGACTGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCCCAGAGACCAGCTTTCAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCTTTAGGTTCTGTTGAAATTTTCCTTAGCCGACACTGCCCGCTATGGTATGCATATGGAGGAAAGCTAAAATGGCTTGAAAGGCTTGCCTACATCAACACTATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCAGCTGTCTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTGGCTAGCGTCTGGTTCATGGCGTTGTTTATTTCCATCATTGCAACGGCCGTGCTGGAGCTTCGATGGAGTGAAGTGAGTATTGAAGACTTATGGCGTAATGAGCAATTCTGGGTGATTGGTGGTGTCTCCGCACATCTTTTTGCAGTGTTCCAAGGCCTTCTCAAGGTCCTTGGCGGAGTAGACACCAACTTCACAGTTACAGCGAAAGCAGCTGAAGACACCGAGTTTGGAGAGCTCTATCTTTTCAAGTGGACGACACTCCTCATCCCGCCGACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCAATCAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAACTGTTTTTTGCTTTCTGGGTAATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACCCCCACCATCGTCGTCCTTTGGTCCGTGCTTCTTGCTTCCATATTTTCACTGGTTTGGGTGCGAATTGATCCCTTCTTGCCCAAGCAAACAGGTCCTGTCCTCAAACAATGTGGAGTTGATTGCTAG 3120 47.21 MAGLVTGSQHYPHGADESLRGPPLSSKICRVCSDEIGLKQDGKVFVACLVCNFPVCRPCYEYERSEGNRCCPQCNTRYKRHKGSPRVIGDEEEGDDADDFDDEFPMKHHNNDDFETKQPNHSENDNYNEQNWHKNVQNSFSVAGSVNGKDMEGEKEGYGSVEWKERIDKWKVRQEKRGLGNKEDGSNNDQEEDDYLLAEARQPLWRKLPISSSKISPYRIVIVLRLIILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFERDGEPNRLSPIDFFVSTVDPLKEPPIITANTVLSILSVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSIEPRAPEFYFSQKMDYLKDKVLASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCCCCCGGSRKSKSKRKGERGLLGGLFKKKKMMGKSYVRKAPGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2660182 2667063 - CaPI482276_06g000790.1 Cam06g0079 128379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0079 1039 CDD mRING-HC-C4C4_CesA 27 77 - -
Cam06g0079 1039 Pfam Zinc-binding RING-finger 24 95 IPR027934 -
Cam06g0079 1039 MobiDBLite consensus disorder prediction 101 122 - -
Cam06g0079 1039 Coils Coil 396 416 - -
Cam06g0079 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 590 IPR029044 -
Cam06g0079 1039 FunFam Cellulose synthase 415 589 - -
Cam06g0079 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 210 1008 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cam06g0079 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 852 IPR029044 -
Cam06g0079 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 102 IPR013083 -
Cam06g0079 1039 MobiDBLite consensus disorder prediction 82 129 - -
Cam06g0079 1039 SUPERFAMILY RING/U-box 24 100 - -
Cam06g0079 1039 Pfam Cellulose synthase 298 1032 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0686 Cam-Chr3:7757440 Cam06g0079 Cam-Chr6:2660182 0.00E+00 dispersed
Cam06g0079 Cam-Chr6:2660182 Cam11g1150 Cam-Chr11:22586771 0.00E+00 dispersed
Cam06g0079 Cam-Chr6:2660182 Cam02g0928 Cam-Chr2:13097730 3.00E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0079 K10999 - csv:101205733 1964.5