Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0099 ATGGAGTTGGATGGCATCGAAGGTATGCCATCCATGGATGTGATGGATGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACACTCTGTTCTTCATGTAAAACAAGGGTAGACAACCGTTGCCCAACGTGCAGACAAGAGCTCGGTGATATCAGATGTCTCGCATTAGAAAAAATAGCTGAATCACTTAAACTGGCTTGTAAATTTTGCACATTTGGGTGCCAGGAGATCTTGCCTTACTACAGCAAACTCAAACACGAATCTGCTTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGATATTCCTTTCCTTGTTTCTCATCTTCGGGACGATCACAAGGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACAGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTCCGATTCATGGGGGACGAAACAGATGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTGATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAAAAAGTCAGAGACAGCCACGACGGCCTCATTATACAACGAAACATGGCACTCTTCTTCTCGGGAGGGGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.79 MELDGIEGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2913643 2916358 - CaPI482276_06g000990.1 Cam06g0099 128399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0099 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 161 294 IPR008974 GO:0005515(InterPro)
Cam06g0099 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 296 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cam06g0099 304 CDD RING-HC_SIAHs 51 89 - -
Cam06g0099 304 Pfam Sina, TRAF-like domain 197 294 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cam06g0099 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 105 IPR013083 -
Cam06g0099 304 SUPERFAMILY TRAF domain-like 106 298 - -
Cam06g0099 304 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 53 88 IPR049548 -
Cam06g0099 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Cam06g0099 304 SUPERFAMILY RING/U-box 47 93 - -
Cam06g0099 304 Pfam Sina, zinc finger 102 177 - -
Cam06g0099 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270(InterPro)
Cam06g0099 304 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Cam06g0099 304 CDD Sina 167 295 - -
Cam06g0099 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 160 IPR013083 -
Cam06g0099 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1061 Cam-Chr5:9702668 Cam06g0099 Cam-Chr6:2913643 2.00E-142 dispersed
Cam05g1246 Cam-Chr5:12076646 Cam06g0099 Cam-Chr6:2913643 7.20E-23 dispersed
Cam05g2872 Cam-Chr5:35714469 Cam06g0099 Cam-Chr6:2913643 4.30E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0099 K04506 - csv:101209363 649.818