Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0111 ATGAGGGATAAAAAAGCTTTTACACCCAACTCCAAGGAAAAGACAGGAAATGAATTTGAGAAGAGGAACAAGAAAGAAAAAAACAGAAAATTAAGACATGGAGAGTCCAACAATTCGTTCATTCCTCTATTTAGGGAGCCAAGTAGTGTTGAGAAGATCTTTTTGGATTTTGAGAGGGAGCAACAAAGAGTAACATTTAGGCCTTCCTCACCACCAACACATGCTTCTCCAACGGCTCTTTCTCCTCGACCAGCCTCTTCGCCCGTCTCTCCTCCTAGGGTTGTAAATCGCCCTAAGGGCTTTCTCTTTCGACCAGAACCGACTCTTCCAAACCATCATGCATCAGCGACTAAAATTCAATCTGCATACAGAGGTTATGTGGCAAGGAGGAGCTTTAGAGCATTGAAGGGGTTGGTGAGACTTCAAGGAGTGGTGAGAGGGCAAAATGTGAAGAGGCAAACAATGAACGCAATGAAACAAATGCAACTGCTGGTTAGGGTTCAGTCTCAAATTCAATCTAGAAGGATTCAAATGCTTGAAACTCAGCCTCTTCATCATGGCCCTAACCACAAGGACATTGACAGTGCCTTAGGCAAATTGAGCTTCACTCAAGCTTCTGAGGCAGGTAACCAAGAAGATTGGGATGATAGTTTGCTAACAAGAGAGGAAATAGAAGCAAGATTGCAAAGAAAAGCAGAGGCTATTGTCAAAAGGGAAAGGGCAATGGCATATGCATATTCCCATCAGTTATGGAAGGGCAGTCCAAATTCATCTCAAGCAGTAATGGGAGATATTAGGGGTGCAGGATTTCCATGGTGGTGGAACTGGTTAGAGCGCCAATTACCTTCATCAAATCTTCCTAATTCTCAACCTCAAACTCTCAAGAATTTCCTTCTTGCACCTCAGACTCCACAACAAAACCAAACCCCAACTAATAATATGGATCAACCAATTACTCTCACACCAAAATCCACCACGGCGGCCAAACCATCCCGAACCAGCTCCCCGAACATGTTCCGAACCCCGCCCGCCGCAAGCTCGAGGTCGTTTTCGAGGGCAAGATCAGGCATTATTAATAATGGAGGAGTTGATTCTTCACCATTTGATGTGGGAATGAAAGATGATGAAAGTCTTACTAGTTGCCCTCCTTTCTCAGTCCCACATTACATGGCTCCCACAGTTTCAGCTAAAGCCAAGCTAAGAGGCTGCACAACACCAACTCCTATAACTACTCACTCAAAAACAAGGATTTCTTTCCCTTTCAAGTGGAACAAACCCAATTTGTTGTTCTCAACTTCAAATTACATCAAGGACTCATCAGCAAATAATAACTCTCAAAGGGCTTTGGATAACAATCAATCTTTGCAATCTTTGAGCAATTTGAGTGTGGATTCTTCTCTTTCCTTGCCTGCTGGGGTTGGAAGAAAGCCATTTAACAGATTTGTGTGA 1449 43.41 MRDKKAFTPNSKEKTGNEFEKRNKKEKNRKLRHGESNNSFIPLFREPSSVEKIFLDFEREQQRVTFRPSSPPTHASPTALSPRPASSPVSPPRVVNRPKGFLFRPEPTLPNHHASATKIQSAYRGYVARRSFRALKGLVRLQGVVRGQNVKRQTMNAMKQMQLLVRVQSQIQSRRIQMLETQPLHHGPNHKDIDSALGKLSFTQASEAGNQEDWDDSLLTREEIEARLQRKAEAIVKRERAMAYAYSHQLWKGSPNSSQAVMGDIRGAGFPWWWNWLERQLPSSNLPNSQPQTLKNFLLAPQTPQQNQTPTNNMDQPITLTPKSTTAAKPSRTSSPNMFRTPPAASSRSFSRARSGIINNGGVDSSPFDVGMKDDESLTSCPPFSVPHYMAPTVSAKAKLRGCTTPTPITTHSKTRISFPFKWNKPNLLFSTSNYIKDSSANNNSQRALDNNQSLQSLSNLSVDSSLSLPAGVGRKPFNRFV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3076655 3082472 - CaPI482276_06g001110.1 Cam06g0111 128411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0111 482 Gene3D - 111 163 - -
Cam06g0111 482 MobiDBLite consensus disorder prediction 1 42 - -
Cam06g0111 482 SMART iq_5 111 133 IPR000048 GO:0005515(InterPro)
Cam06g0111 482 MobiDBLite consensus disorder prediction 63 94 - -
Cam06g0111 482 MobiDBLite consensus disorder prediction 322 351 - -
Cam06g0111 482 Pfam IQ calmodulin-binding motif 113 133 IPR000048 GO:0005515(InterPro)
Cam06g0111 482 ProSiteProfiles IQ motif profile. 112 140 - -
Cam06g0111 482 PANTHER IQ-DOMAIN 5-RELATED 32 433 - -
Cam06g0111 482 MobiDBLite consensus disorder prediction 1 34 - -
Cam06g0111 482 MobiDBLite consensus disorder prediction 64 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0111 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0111 Cam-Chr6:3076655 Cam09g2081 Cam-Chr9:35375784 4.40E-26 dispersed
Cam06g0111 Cam-Chr6:3076655 Cam07g1539 Cam-Chr7:30038013 4.30E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1327 . Blo12g00275 Bda03g00960 . Bpe04g00888 Bpe14g00792 Bma04g00856 . Cmo08g00188 . Cma06g01692 . . . . . . Bhi01g03674 Tan10g1432 . . . . . Cla06g00104 Cam06g0111 Cec06g0116 Cco06g0115 Clacu06g0117 Cmu06g0115 Cre06g0885 Cone14ag0616 Cone15ag0623 . Cone11ag0674 . . . Cme07g01945 . . . Bda13g00537 . . . . Sed07g0076 . . . . Car08g00167 . . Cpe17g01077 Bhi12g02466 Tan06g1528 Cmetu11g0606 . . . . . . . . . . . . . . Cme11g02434
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011147 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31