Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0126 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCATCTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACCAGCCATTCGTCGGAGTACTCACCGGAACACTCTCCATCCGCTGCTGCTGCCGCCACCACAGCTGCTGCCACGGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCTATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCTTCCCCTTATGGCGACTCTGATCAAAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGAGCCACAGAAACTGGCCTTAGCTGCTACAAAACCCTCGTCGCTGTCGCCGAGAAGAATCACAACTTTGACTCTGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACAACATTCGGGCATGTGGCATCGAACGGTGCGATTCTCGAAGCGCTCGAGGGAGAAACGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACCCCACATCTAAAGCTAACAGTGGTGACAACAACAAGCATAGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAATTCAACCCTATAACAAATCTCAACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAAGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATTGTAGAGGAAGAAGCTGATTTCATAAGCTCCAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTCTACTTTGAGATGTTAGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCAAGAAATTAGTGAAGAAGAAATGGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGATAAAAAGGCTCAAACAAGCAACTTTTTCATCAGCTGATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCCGGTTGGGCATTGTGGCGTCCGACCGCGGCCACTACCGGAGAAGAAGAAGAAGGTGGTGGTGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA 1371 45.15 MDITFFTAKEAPTSFFNQSHDHHLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAATTAAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDQEISEEEMGSERREKGKQWIKRLKQATFSSADFSEDVMDDVKALLKRYKPGWALWRPTAATTGEEEEGGGGGDDSGGIYLTWKEEPVVWVSAWKP 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3221289 3223059 + CaPI482276_06g001260.1 Cam06g0126 128426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0126 456 Pfam GRAS domain family 68 455 IPR005202 -
Cam06g0126 456 ProSiteProfiles GRAS family profile. 57 455 IPR005202 -
Cam06g0126 456 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 454 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g0171 Cam-Chr2:2706176 Cam06g0126 Cam-Chr6:3221289 7.20E-44 dispersed
Cam02g1314 Cam-Chr2:25588732 Cam06g0126 Cam-Chr6:3221289 2.40E-99 dispersed
Cam06g0126 Cam-Chr6:3221289 Cam11g0755 Cam-Chr11:9384547 6.40E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52074 PF03514 GRAS 4.40E-95 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0126 K27743 - csv:101206730 780.4