Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0129 ATGCCGCTTCCTCCCAAACTGAGCCGACAACTGCACAGGGACTCGGACGTTACAGAGATGCCTTCCAACAGCTTGTGGGTTGGCAACTTATCCACGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCCCAAGCTGCCAAAGAGGCTCTTCAGGGTTTTTTTCTGCGTGGGAATTCTATCAAAATCGAGTTTGCTAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGACTTTAAGTTTTTGCGAGATCGGAATACGGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATGATGAATGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAGTGAGAAGAGATCAGTGGCCAGACACCAGAGATGGGCATGGTCAGCTTCAGGGTAGAAATGTGGGGATGGGCGATTTCCAATCGGGTTATAAAAGACCACTGCATGCTCAATCTTCTGAAATGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGGACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGGCTAGGCCTGATATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACCTGTTGGGACATCCTCATCCATTGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGCATTCTTGGACCAAATACAGCAGTAAGACCGCCACCCTTTGGTCCTCCACAGGGTATCTCAGGCCCCCCTGAGTTTAATGACTTGGCCACGTCTCATAGTTTCCAGGATGCAAATTCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCAGTGAGGTCCACTCCAAATTCATGGGATGTTTTGGATGTAAATCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCGGCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAACTGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCAATAAGTGATGGAGGTTCTTCTGTTCCATATGCCAATGCTCCAGCTAAGGCTCCTGCTATTCCTATAGGTGCAAGGGCCCCAGTTAGTGGTCCTGGCCAGAGCCATGCTGAAAATGATTTTATATGGCGGGGAATAATTGCCAAGGGAGGAACACCTGTTTGTCATGCTCGTTGTGTCCCAATTGGTGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAAGCCACAGGATTCGACATTGTCTTTTTCTTGCCAGATAGTGAGGATGATTTTGCATCGTATACTGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCTGAACGGCTCTATGGTCTGGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTGCTCCCCAACAGTCATATCTACCCATTCCTACATCTGACTATGGTGAGAGACAACATGTTTTGCCTTCACAAACTGAATATGGATCAGTGCCTTCAAAGCAGGAGCAACTTCCTCCAATGGATTATAGTAGGGTTTTGCATGACGAAACCAAGGAGCCCCCAAAACCGCTTCTGCCCACAAGTGAGCCACCACCACTAGCAGTTCAGCCCTTGCCTCAAGAGTATTCTGGTAACAATAATACAGCTGCAATCTCGCAAGCTGGGTTAGCATTAACACCCGAGCTTATTGCCACATTGGTTTCTTTACTGCCTGGCAAGACACAGTCATCCAGCTTAGAGAGTGCCAAACAACCAGCAGTCTCACCACAACCTCCAATTCCTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCTAACCGGTCAGCCATTTCAGCAAATGGGGAATCATTTTAATCCTCAGGGACAGAGCCTTTCTCAATTTCAGCCTTATCCACCCCTCCCCCAGACACCTAACCAGCTTGCACCGCAAGCCATTGGAACAAGCCAAATCCAAGATGCTGCTGTCAGTCTGCCACAGCAGCAGCAGGTACCCATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTTTGGCCTTGGTCAATTCTCAGTATCAGCATGATGTCTCGCAAATTAGCCAGAGAGGTTATGGGTCAGTCAATGGAGTTGATACTTCTGGGTATGGTCCACCAGTTATGCAGCAATCAACAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTACTACACAGTCACAACCTATTACTCAATTAGCATCAGATAGGGTGAACCCCCCTGAGCTTCCTTATCAGATGCAGCATTTGCAATCTGCGAACCTCGGCACTGGCAGTGGGACCAATTCAGCAGCAGCAGCAGCAGCAACAACAGCAAGCAGGCTGGGGTTCAGGAAATCAATAGTGAGCAGCCCTTCTTTTAGGTAA 2982 46.18 MPLPPKLSRQLHRDSDVTEMPSNSLWVGNLSTDVTDADLMNLFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGFFLRGNSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDDFKFLRDRNTAFVEYVRLEDASQALRMMNGKRIGGDQIRVDFLRSQPVRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSEMRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPGPVKEHPGFYPGGKEARPDMFFNEHQIRPPQMDLLGHPHPLVQNKFPGPLPSSGILGPNTAVRPPPFGPPQGISGPPEFNDLATSHSFQDANSKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDSKRSRIDGPASLDDASFPPRKLDNRGMGFDQQYGVGPISDGGSSVPYANAPAKAPAIPIGARAPVSGPGQSHAENDFIWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPAPQQSYLPIPTSDYGERQHVLPSQTEYGSVPSKQEQLPPMDYSRVLHDETKEPPKPLLPTSEPPPLAVQPLPQEYSGNNNTAAISQAGLALTPELIATLVSLLPGKTQSSSLESAKQPAVSPQPPIPPVVSNKGATSEGWMVGHQSSDLTGQPFQQMGNHFNPQGQSLSQFQPYPPLPQTPNQLAPQAIGTSQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENAQASGLALVNSQYQHDVSQISQRGYGSVNGVDTSGYGPPVMQQSTNTVTLSNQGQGSTTQSQPITQLASDRVNPPELPYQMQHLQSANLGTGSGTNSAAAAAATTASRLGFRKSIVSSPSFR 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3260133 3273686 + CaPI482276_06g001290.1 Cam06g0129 128429

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0129 993 MobiDBLite consensus disorder prediction 956 975 - -
Cam06g0129 993 MobiDBLite consensus disorder prediction 393 429 - -
Cam06g0129 993 MobiDBLite consensus disorder prediction 956 974 - -
Cam06g0129 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 PANTHER RNA RECOGNITION MOTIF-CONTAINING 190 672 - -
Cam06g0129 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 MobiDBLite consensus disorder prediction 913 946 - -
Cam06g0129 993 FunFam Flowering time control protein FPA 15 97 - -
Cam06g0129 993 MobiDBLite consensus disorder prediction 441 466 - -
Cam06g0129 993 SUPERFAMILY RNA-binding domain, RBD 218 302 IPR035979 GO:0003676(InterPro)
Cam06g0129 993 SUPERFAMILY RNA-binding domain, RBD 97 195 IPR035979 GO:0003676(InterPro)
Cam06g0129 993 Gene3D - 209 300 IPR012677 -
Cam06g0129 993 MobiDBLite consensus disorder prediction 704 718 - -
Cam06g0129 993 MobiDBLite consensus disorder prediction 913 940 - -
Cam06g0129 993 MobiDBLite consensus disorder prediction 695 726 - -
Cam06g0129 993 CDD RRM_SF 25 91 - -
Cam06g0129 993 Gene3D - 7 96 IPR012677 -
Cam06g0129 993 MobiDBLite consensus disorder prediction 177 196 - -
Cam06g0129 993 SUPERFAMILY RNA-binding domain, RBD 16 97 IPR035979 GO:0003676(InterPro)
Cam06g0129 993 CDD RRM_SF 230 292 - -
Cam06g0129 993 SMART rrm1_1 101 168 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 SMART rrm1_1 224 292 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 SMART rrm1_1 24 91 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 CDD RRM_SF 102 168 - -
Cam06g0129 993 Pfam RNA recognition motif 25 89 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 Pfam RNA recognition motif 235 289 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 Pfam RNA recognition motif 102 166 IPR000504 GO:0003723(InterPro)
Cam06g0129 993 Gene3D - 97 208 IPR012677 -
Cam06g0129 993 Pfam SPOC domain 512 639 IPR012921 -
Cam06g0129 993 CDD SPOC_FPA-like 519 639 - -
Cam06g0129 993 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 172 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1106 Cam-Chr2:20365050 Cam06g0129 Cam-Chr6:3260133 9.10E-69 dispersed
Cam06g0129 Cam-Chr6:3260133 Cam05g2164 Cam-Chr5:30040189 2.00E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41