Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0132 ATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCAGCGGTTGTGTTCTAGCGGCGTTACGAGTTACTGTTTTTCATCAGAAGTTCATGGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTACAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGACGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGACGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 990 45.86 MASTLFRLVVSTIFLDFDFPKSQPLSSHPSRPSSILRHLLLSLSPSFSVFILKHPLSLLLLFHFLFHLSSGCVLAALRVTVFHQKFMVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLTANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3281083 3283669 + CaPI482276_06g001320.1 Cam06g0132 128432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0132 329 Gene3D Classic Zinc Finger 92 186 - -
Cam06g0132 329 SMART bboxneu5 92 139 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 SMART bboxneu5 144 191 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 ProSiteProfiles Zinc finger B-box type profile. 92 139 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 MobiDBLite consensus disorder prediction 206 227 - -
Cam06g0132 329 CDD Bbox1_BBX-like 148 190 IPR049808 -
Cam06g0132 329 ProSiteProfiles Zinc finger B-box type profile. 144 191 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 PANTHER B-BOX ZINC FINGER PROTEIN 22 93 328 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cam06g0132 329 Pfam B-box zinc finger 95 137 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 Pfam B-box zinc finger 145 187 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 CDD Bbox1_BBX-like 97 139 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0132 Cam-Chr6:3281083 Cam07g1037 Cam-Chr7:24688659 2.70E-35 dispersed
Cam06g0132 Cam-Chr6:3281083 Cam08g1927 Cam-Chr8:25213136 2.40E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52075 PF00643 zf-B_box 1.20E-07 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0132 - - - 0.0