Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam06g0132 ATGGCGTCCACTCTTTTCCGCCTTGTTGTCTCCACCATCTTTCTTGATTTTGATTTCCCTAAATCTCAACCCTTATCATCTCACCCTTCTCGACCCTCCTCAATCCTCCGCCATTTACTCCTCTCTCTATCCCCTTCTTTCTCCGTTTTTATTCTCAAACACCCACTTTCCCTTCTTCTTCTCTTCCATTTTCTCTTCCATCTCTCCAGCGGTTGTGTTCTAGCGGCGTTACGAGTTACTGTTTTTCATCAGAAGTTCATGGTCCAGAAGGAGAAGATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTCTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTACAGCTAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGTACGAAGGACGTTGACAAGGCCAAGATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCCAACTTCACATCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCACTTGCATGCAGACCGACGAAGTCGAGCATATCATACAAAAAGCCTAGGATCGAGATGGTTGACGACGAGGAGTTTTTTACGGTTCCTGATCTTGGATGA 990 45.86 MASTLFRLVVSTIFLDFDFPKSQPLSSHPSRPSSILRHLLLSLSPSFSVFILKHPLSLLLLFHFLFHLSSGCVLAALRVTVFHQKFMVQKEKMKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLTANHQRFLATGIRVAMSSSCTKDVDKAKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSALACRPTKSSISYKKPRIEMVDDEEFFTVPDLG 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3281083 3283669 + CaPI482276_06g001320.1 Cam06g0132 128432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam06g0132 329 Gene3D Classic Zinc Finger 92 186 - -
Cam06g0132 329 SMART bboxneu5 92 139 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 SMART bboxneu5 144 191 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 ProSiteProfiles Zinc finger B-box type profile. 92 139 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 MobiDBLite consensus disorder prediction 206 227 - -
Cam06g0132 329 CDD Bbox1_BBX-like 148 190 IPR049808 -
Cam06g0132 329 ProSiteProfiles Zinc finger B-box type profile. 144 191 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 PANTHER B-BOX ZINC FINGER PROTEIN 22 93 328 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cam06g0132 329 Pfam B-box zinc finger 95 137 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 Pfam B-box zinc finger 145 187 IPR000315 GO:0008270(InterPro)
Cam06g0132 329 CDD Bbox1_BBX-like 97 139 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam06g0132 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0132 Cam-Chr6:3281083 Cam07g1037 Cam-Chr7:24688659 2.70E-35 dispersed
Cam06g0132 Cam-Chr6:3281083 Cam08g1927 Cam-Chr8:25213136 2.40E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1986 . 87 465 Orphan Transcription Factor Family AT5G61850 70.3 1.3e-122 436.8
Cam06g0132 . 93 259 Orphan Transcription Factor Family AT1G06040 67.2 3.8e-60 228.0
Cam07g1037 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52075 PF00643 zf-B_box 1.20E-07 No_clan Cam TF